Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC079250.1-201ENST00000456046 531 ntBASIC13.93□□□□□ -0.18
VCANP13611 MIR4526-201ENST00000583168 87 ntBASIC13.93□□□□□ -0.18
VCANP13611 AC011456.1-201ENST00000592270 536 ntTSL 4 BASIC13.93□□□□□ -0.18
VCANP13611 AC025165.4-201ENST00000602327 433 ntBASIC13.93□□□□□ -0.18
VCANP13611 AL137028.1-201ENST00000620521 555 ntBASIC13.93□□□□□ -0.18
VCANP13611 UBA3-212ENST00000630585 390 ntTSL 4 BASIC13.93□□□□□ -0.18
VCANP13611 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VCANP13611 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VCANP13611 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VCANP13611 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
VCANP13611 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
VCANP13611 ANKDD1A-207ENST00000496660 1477 ntTSL 2 BASIC13.93□□□□□ -0.18
VCANP13611 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
VCANP13611 CD9-212ENST00000610354 1315 ntTSL 5 BASIC13.93□□□□□ -0.18
VCANP13611 MYCNOS-202ENST00000641263 1313 ntBASIC13.93□□□□□ -0.18
VCANP13611 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
VCANP13611 AC106799.1-201ENST00000503188 1676 ntTSL 2 BASIC13.93□□□□□ -0.18
VCANP13611 VTI1BP2-201ENST00000394154 696 ntBASIC13.93□□□□□ -0.18
VCANP13611 PHKA1P1-201ENST00000420457 621 ntBASIC13.93□□□□□ -0.18
VCANP13611 AP3M2-205ENST00000517922 1094 ntTSL 2 BASIC13.93□□□□□ -0.18
VCANP13611 AC025259.1-201ENST00000550301 647 ntTSL 3 BASIC13.93□□□□□ -0.18
VCANP13611 AP005121.2-201ENST00000583306 1101 ntBASIC13.93□□□□□ -0.18
VCANP13611 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
VCANP13611 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC13.93□□□□□ -0.18
VCANP13611 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
VCANP13611 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
VCANP13611 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC13.93□□□□□ -0.18
VCANP13611 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC13.93□□□□□ -0.18
VCANP13611 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
VCANP13611 OR10AA1P-201ENST00000417823 937 ntBASIC13.92□□□□□ -0.18
VCANP13611 RPL38-206ENST00000533498 532 ntAPPRIS P2 TSL 2 BASIC13.92□□□□□ -0.18
VCANP13611 AC018362.2-202ENST00000567089 562 ntTSL 3 BASIC13.92□□□□□ -0.18
VCANP13611 AC091132.3-201ENST00000579701 470 ntBASIC13.92□□□□□ -0.18
VCANP13611 AC138645.1-201ENST00000582765 470 ntBASIC13.92□□□□□ -0.18
VCANP13611 AC245748.2-201ENST00000588655 574 ntTSL 4 BASIC13.92□□□□□ -0.18
VCANP13611 ATXN10-212ENST00000640901 1185 ntTSL 5 BASIC13.92□□□□□ -0.18
VCANP13611 SMUG1-220ENST00000513838 2119 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
VCANP13611 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
VCANP13611 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
VCANP13611 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC13.92□□□□□ -0.18
VCANP13611 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VCANP13611 CICP16-201ENST00000502609 2813 ntBASIC13.92□□□□□ -0.18
VCANP13611 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC13.92□□□□□ -0.18
VCANP13611 LINC01115-202ENST00000621134 1519 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
VCANP13611 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
VCANP13611 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
VCANP13611 MRPL55-212ENST00000366739 641 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
VCANP13611 OOEP-201ENST00000370359 478 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VCANP13611 AL138885.2-201ENST00000420389 539 ntTSL 3 BASIC13.92□□□□□ -0.18
VCANP13611 AC103925.1-201ENST00000453155 771 ntTSL 3 BASIC13.92□□□□□ -0.18
VCANP13611 AL356479.1-202ENST00000456933 714 ntTSL 3 BASIC13.92□□□□□ -0.18
VCANP13611 EEF1DP8-201ENST00000534760 536 ntBASIC13.92□□□□□ -0.18
VCANP13611 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC13.92□□□□□ -0.18
VCANP13611 MIR7847-201ENST00000610912 103 ntBASIC13.92□□□□□ -0.18
VCANP13611 NBEAP3-201ENST00000420638 1493 ntBASIC13.92□□□□□ -0.18
VCANP13611 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC13.92□□□□□ -0.18
VCANP13611 AC004554.2-201ENST00000634846 1893 ntTSL 5 BASIC13.92□□□□□ -0.18
VCANP13611 TTC39B-201ENST00000297615 3053 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
VCANP13611 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13.92□□□□□ -0.18
VCANP13611 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
VCANP13611 PSAT1-201ENST00000347159 1411 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
VCANP13611 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
VCANP13611 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VCANP13611 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
VCANP13611 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VCANP13611 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VCANP13611 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VCANP13611 ZCCHC9-203ENST00000407610 1555 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
VCANP13611 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VCANP13611 ARF1P2-201ENST00000392493 538 ntBASIC13.92□□□□□ -0.18
VCANP13611 CFAP36-205ENST00000407816 1125 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
VCANP13611 MESTP2-201ENST00000559787 889 ntBASIC13.92□□□□□ -0.18
VCANP13611 IGHV1OR16-3-201ENST00000568138 205 ntBASIC13.92□□□□□ -0.18
VCANP13611 MYL12A-206ENST00000578611 1004 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
VCANP13611 FAM231B-201ENST00000600179 510 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
VCANP13611 AL033381.2-201ENST00000603854 732 ntBASIC13.92□□□□□ -0.18
VCANP13611 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC13.92□□□□□ -0.18
VCANP13611 AJ011931.1-201ENST00000618749 2492 ntBASIC13.92□□□□□ -0.18
VCANP13611 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VCANP13611 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
VCANP13611 KIAA0391-211ENST00000605870 1406 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
VCANP13611 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC13.92□□□□□ -0.18
VCANP13611 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VCANP13611 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VCANP13611 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VCANP13611 AC004884.1-201ENST00000393647 319 ntBASIC13.91□□□□□ -0.18
VCANP13611 AC064836.1-201ENST00000405197 704 ntBASIC13.91□□□□□ -0.18
VCANP13611 AF274858.2-201ENST00000446370 617 ntTSL 2 BASIC13.91□□□□□ -0.18
VCANP13611 UBE2D3-221ENST00000507845 577 ntTSL 4 BASIC13.91□□□□□ -0.18
VCANP13611 LINC02328-202ENST00000554647 522 ntTSL 4 BASIC13.91□□□□□ -0.18
VCANP13611 ZNF548-207ENST00000597400 589 ntTSL 3 BASIC13.91□□□□□ -0.18
VCANP13611 AL356423.1-201ENST00000604953 538 ntBASIC13.91□□□□□ -0.18
VCANP13611 AC137723.2-201ENST00000623540 398 ntBASIC13.91□□□□□ -0.18
VCANP13611 RPS9-213ENST00000626547 476 ntTSL 2 BASIC13.91□□□□□ -0.18
VCANP13611 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
VCANP13611 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VCANP13611 AKTIP-201ENST00000300245 2133 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
VCANP13611 CASC15-202ENST00000561912 1449 ntTSL 5 BASIC13.91□□□□□ -0.18
VCANP13611 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VCANP13611 CDK7-202ENST00000502604 1455 ntTSL 5 BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms