Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RPL13AP20-201ENST00000459725 609 ntBASIC13.58□□□□□ -0.24
FOXA1P55317 FAM86HP-204ENST00000513466 959 ntBASIC13.58□□□□□ -0.24
FOXA1P55317 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC13.58□□□□□ -0.24
FOXA1P55317 RBM7-207ENST00000544582 692 ntTSL 3 BASIC13.58□□□□□ -0.24
FOXA1P55317 EID1-202ENST00000560490 584 ntTSL 3 BASIC13.58□□□□□ -0.24
FOXA1P55317 RN7SL560P-201ENST00000577943 264 ntBASIC13.58□□□□□ -0.24
FOXA1P55317 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC13.58□□□□□ -0.24
FOXA1P55317 COX11-210ENST00000639671 696 ntBASIC13.58□□□□□ -0.24
FOXA1P55317 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA1P55317 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC13.58□□□□□ -0.24
FOXA1P55317 CCDC178-201ENST00000300227 3087 ntAPPRIS P3 TSL 2 BASIC13.58□□□□□ -0.24
FOXA1P55317 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA1P55317 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA1P55317 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA1P55317 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA1P55317 AC018735.1-201ENST00000437208 1502 ntBASIC13.58□□□□□ -0.24
FOXA1P55317 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA1P55317 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
FOXA1P55317 TMEM78-201ENST00000323223 2175 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
FOXA1P55317 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
FOXA1P55317 IFT172-203ENST00000416524 1982 ntTSL 2 BASIC13.58□□□□□ -0.24
FOXA1P55317 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC13.58□□□□□ -0.24
FOXA1P55317 AL031595.1-201ENST00000623969 4709 ntBASIC13.58□□□□□ -0.24
FOXA1P55317 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
FOXA1P55317 CEP112-202ENST00000392769 3517 ntAPPRIS P4 TSL 5 BASIC13.57□□□□□ -0.24
FOXA1P55317 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC13.57□□□□□ -0.24
FOXA1P55317 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 MGRN1-211ENST00000588994 1665 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
FOXA1P55317 GHET1-201ENST00000627071 1906 ntBASIC13.57□□□□□ -0.24
FOXA1P55317 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
FOXA1P55317 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
FOXA1P55317 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
FOXA1P55317 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
FOXA1P55317 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC13.57□□□□□ -0.24
FOXA1P55317 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC13.57□□□□□ -0.24
FOXA1P55317 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC13.57□□□□□ -0.24
FOXA1P55317 KRT223P-202ENST00000449164 1292 ntBASIC13.57□□□□□ -0.24
FOXA1P55317 BNIP3P42-201ENST00000454982 569 ntBASIC13.57□□□□□ -0.24
FOXA1P55317 ATP6V0CP2-201ENST00000469409 207 ntBASIC13.57□□□□□ -0.24
FOXA1P55317 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 AC009779.1-201ENST00000551138 283 ntBASIC13.57□□□□□ -0.24
FOXA1P55317 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
FOXA1P55317 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC13.57□□□□□ -0.24
FOXA1P55317 CMC2-204ENST00000562713 573 ntTSL 3 BASIC13.57□□□□□ -0.24
FOXA1P55317 AP005482.1-201ENST00000563722 1273 ntBASIC13.57□□□□□ -0.24
FOXA1P55317 CMC2-209ENST00000565108 399 ntTSL 2 BASIC13.57□□□□□ -0.24
FOXA1P55317 BNIP3P29-201ENST00000598302 571 ntBASIC13.57□□□□□ -0.24
FOXA1P55317 AL022334.2-201ENST00000610000 484 ntBASIC13.57□□□□□ -0.24
FOXA1P55317 AC133552.6-201ENST00000613406 534 ntBASIC13.57□□□□□ -0.24
FOXA1P55317 AC011447.5-201ENST00000616168 564 ntBASIC13.57□□□□□ -0.24
FOXA1P55317 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
FOXA1P55317 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 ELP2-221ENST00000542824 2288 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC13.57□□□□□ -0.24
FOXA1P55317 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 SNRNP27-201ENST00000244227 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 AC002350.2-201ENST00000623894 1828 ntBASIC13.57□□□□□ -0.24
FOXA1P55317 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 C16orf62-215ENST00000542263 3138 ntTSL 2 BASIC13.57□□□□□ -0.24
FOXA1P55317 CDK20-209ENST00000605159 1860 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 NXPE3-201ENST00000273347 3941 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
FOXA1P55317 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA1P55317 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA1P55317 AC007326.2-201ENST00000624224 7579 ntBASIC13.56□□□□□ -0.24
FOXA1P55317 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA1P55317 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC13.56□□□□□ -0.24
FOXA1P55317 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA1P55317 SEZ6L-201ENST00000248933 3248 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA1P55317 PITX2-211ENST00000613094 3240 ntAPPRIS ALT1 TSL 5 BASIC13.56□□□□□ -0.24
FOXA1P55317 SEZ6L-210ENST00000629590 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA1P55317 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
FOXA1P55317 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
FOXA1P55317 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA1P55317 PPP1R26P2-201ENST00000611403 3595 ntBASIC13.56□□□□□ -0.24
FOXA1P55317 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
FOXA1P55317 TTC39B-201ENST00000297615 3053 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
FOXA1P55317 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA1P55317 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA1P55317 TNN-202ENST00000621086 4234 ntTSL 5 BASIC13.56□□□□□ -0.24
FOXA1P55317 SLC45A2-201ENST00000296589 1772 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA1P55317 ALDH7A1-234ENST00000637782 1773 ntAPPRIS ALT1 TSL 5 BASIC13.56□□□□□ -0.24
FOXA1P55317 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC13.56□□□□□ -0.24
FOXA1P55317 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC13.56□□□□□ -0.24
FOXA1P55317 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
FOXA1P55317 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA1P55317 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms