Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC092135.3-201ENST00000624151 1846 ntBASIC12.27□□□□□ -0.45
COL8A1P27658 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
COL8A1P27658 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
COL8A1P27658 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
COL8A1P27658 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
COL8A1P27658 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
COL8A1P27658 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
COL8A1P27658 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC12.27□□□□□ -0.45
COL8A1P27658 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC12.27□□□□□ -0.45
COL8A1P27658 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
COL8A1P27658 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
COL8A1P27658 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
COL8A1P27658 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC12.26□□□□□ -0.45
COL8A1P27658 CICP23-201ENST00000605013 2741 ntBASIC12.26□□□□□ -0.45
COL8A1P27658 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC12.26□□□□□ -0.45
COL8A1P27658 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
COL8A1P27658 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC12.26□□□□□ -0.45
COL8A1P27658 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC12.26□□□□□ -0.45
COL8A1P27658 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC12.26□□□□□ -0.45
COL8A1P27658 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
COL8A1P27658 AC139712.1-201ENST00000378256 1875 ntBASIC12.26□□□□□ -0.45
COL8A1P27658 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC12.26□□□□□ -0.45
COL8A1P27658 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC12.26□□□□□ -0.45
COL8A1P27658 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
COL8A1P27658 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
COL8A1P27658 SMIM26-201ENST00000411646 505 ntAPPRIS P5 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 AL954722.1-201ENST00000431238 259 ntBASIC12.26□□□□□ -0.45
COL8A1P27658 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 SMIM26-202ENST00000435844 575 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC12.26□□□□□ -0.45
COL8A1P27658 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC12.26□□□□□ -0.45
COL8A1P27658 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC12.26□□□□□ -0.45
COL8A1P27658 SNRPD2P2-201ENST00000473818 333 ntBASIC12.26□□□□□ -0.45
COL8A1P27658 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC12.26□□□□□ -0.45
COL8A1P27658 AC108718.1-201ENST00000482382 554 ntTSL 4 BASIC12.26□□□□□ -0.45
COL8A1P27658 AC005740.1-201ENST00000515639 522 ntBASIC12.26□□□□□ -0.45
COL8A1P27658 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
COL8A1P27658 AC005899.5-201ENST00000584721 552 ntTSL 5 BASIC12.26□□□□□ -0.45
COL8A1P27658 CYP1B1-AS1-204ENST00000589303 579 ntTSL 5 BASIC12.26□□□□□ -0.45
COL8A1P27658 HCG18-241ENST00000602290 821 ntTSL 2 BASIC12.26□□□□□ -0.45
COL8A1P27658 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC12.26□□□□□ -0.45
COL8A1P27658 PDXDC2P-206ENST00000534700 1315 ntBASIC12.26□□□□□ -0.45
COL8A1P27658 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC12.26□□□□□ -0.45
COL8A1P27658 EML1-203ENST00000334192 4064 ntTSL 5 BASIC12.26□□□□□ -0.45
COL8A1P27658 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC12.26□□□□□ -0.45
COL8A1P27658 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC12.26□□□□□ -0.45
COL8A1P27658 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC12.26□□□□□ -0.45
COL8A1P27658 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC12.26□□□□□ -0.45
COL8A1P27658 C1R-202ENST00000536053 2347 ntTSL 2 BASIC12.26□□□□□ -0.45
COL8A1P27658 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL8A1P27658 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
COL8A1P27658 AC106881.1-201ENST00000605849 3329 ntBASIC12.26□□□□□ -0.45
COL8A1P27658 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC12.25□□□□□ -0.45
COL8A1P27658 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC12.25□□□□□ -0.45
COL8A1P27658 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
COL8A1P27658 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC12.25□□□□□ -0.45
COL8A1P27658 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC12.25□□□□□ -0.45
COL8A1P27658 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC12.25□□□□□ -0.45
COL8A1P27658 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC12.25□□□□□ -0.45
COL8A1P27658 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
COL8A1P27658 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC12.25□□□□□ -0.45
COL8A1P27658 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
COL8A1P27658 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
COL8A1P27658 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC12.25□□□□□ -0.45
COL8A1P27658 HDGF-202ENST00000368206 960 ntTSL 5 BASIC12.25□□□□□ -0.45
COL8A1P27658 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL8A1P27658 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
COL8A1P27658 HLA-DMA-202ENST00000395303 1007 ntBASIC12.25□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms