Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HDAC4P56524 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HDAC4P56524 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC14.7□□□□□ -0.06
HDAC4P56524 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC14.7□□□□□ -0.06
HDAC4P56524 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HDAC4P56524 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC14.69□□□□□ -0.06
HDAC4P56524 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HDAC4P56524 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC14.69□□□□□ -0.06
HDAC4P56524 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HDAC4P56524 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HDAC4P56524 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC14.69□□□□□ -0.06
HDAC4P56524 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HDAC4P56524 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC14.69□□□□□ -0.06
HDAC4P56524 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HDAC4P56524 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC14.69□□□□□ -0.06
HDAC4P56524 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC14.69□□□□□ -0.06
HDAC4P56524 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HDAC4P56524 SALL4P6-201ENST00000429385 1691 ntBASIC14.69□□□□□ -0.06
HDAC4P56524 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HDAC4P56524 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
HDAC4P56524 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HDAC4P56524 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
HDAC4P56524 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
HDAC4P56524 MIR769-201ENST00000390225 118 ntBASIC14.69□□□□□ -0.06
HDAC4P56524 ELK2AP-201ENST00000392510 1007 ntBASIC14.69□□□□□ -0.06
HDAC4P56524 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC14.69□□□□□ -0.06
HDAC4P56524 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC14.69□□□□□ -0.06
HDAC4P56524 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC14.69□□□□□ -0.06
HDAC4P56524 AC006987.1-201ENST00000413610 527 ntBASIC14.69□□□□□ -0.06
HDAC4P56524 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC14.69□□□□□ -0.06
HDAC4P56524 PDIA3P2-201ENST00000428073 158 ntBASIC14.69□□□□□ -0.06
HDAC4P56524 POU5F1P2-201ENST00000521750 823 ntBASIC14.69□□□□□ -0.06
HDAC4P56524 ADM-202ENST00000524948 584 ntTSL 2 BASIC14.69□□□□□ -0.06
HDAC4P56524 AL161670.2-201ENST00000557650 1227 ntBASIC14.69□□□□□ -0.06
HDAC4P56524 NAT9-211ENST00000580632 799 ntTSL 3 BASIC14.69□□□□□ -0.06
HDAC4P56524 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
HDAC4P56524 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC14.69□□□□□ -0.06
HDAC4P56524 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC14.69□□□□□ -0.06
HDAC4P56524 TP53-221ENST00000615910 1149 ntTSL 5 BASIC14.69□□□□□ -0.06
HDAC4P56524 AC079336.7-201ENST00000623428 1078 ntBASIC14.69□□□□□ -0.06
HDAC4P56524 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HDAC4P56524 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC14.69□□□□□ -0.06
HDAC4P56524 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HDAC4P56524 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
HDAC4P56524 PEG13-201ENST00000631594 5667 ntBASIC14.69□□□□□ -0.06
HDAC4P56524 FMO6P-201ENST00000236166 1620 ntBASIC14.69□□□□□ -0.06
HDAC4P56524 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
HDAC4P56524 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HDAC4P56524 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC14.69□□□□□ -0.06
HDAC4P56524 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
HDAC4P56524 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
HDAC4P56524 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
HDAC4P56524 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
HDAC4P56524 AC005014.1-201ENST00000432006 2976 ntBASIC14.69□□□□□ -0.06
HDAC4P56524 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
HDAC4P56524 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
HDAC4P56524 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
HDAC4P56524 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
HDAC4P56524 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HDAC4P56524 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC14.69□□□□□ -0.06
HDAC4P56524 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
HDAC4P56524 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC14.68□□□□□ -0.06
HDAC4P56524 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
HDAC4P56524 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC14.68□□□□□ -0.06
HDAC4P56524 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC14.68□□□□□ -0.06
HDAC4P56524 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC14.68□□□□□ -0.06
HDAC4P56524 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC14.68□□□□□ -0.06
HDAC4P56524 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC14.68□□□□□ -0.06
HDAC4P56524 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
HDAC4P56524 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
HDAC4P56524 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC14.68□□□□□ -0.06
HDAC4P56524 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
HDAC4P56524 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC14.68□□□□□ -0.06
HDAC4P56524 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC14.68□□□□□ -0.06
HDAC4P56524 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
HDAC4P56524 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC14.68□□□□□ -0.06
HDAC4P56524 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 NAGK-204ENST00000443872 878 ntTSL 3 BASIC14.68□□□□□ -0.06
HDAC4P56524 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC14.68□□□□□ -0.06
HDAC4P56524 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC14.68□□□□□ -0.06
HDAC4P56524 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC14.68□□□□□ -0.06
HDAC4P56524 AC012618.1-201ENST00000461223 412 ntBASIC14.68□□□□□ -0.06
HDAC4P56524 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC14.68□□□□□ -0.06
HDAC4P56524 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC14.68□□□□□ -0.06
HDAC4P56524 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC14.68□□□□□ -0.06
HDAC4P56524 AL021707.6-201ENST00000609212 491 ntBASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms