Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC13.3□□□□□ -0.28
SOX3P41225 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC13.3□□□□□ -0.28
SOX3P41225 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
SOX3P41225 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC13.3□□□□□ -0.28
SOX3P41225 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
SOX3P41225 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC13.3□□□□□ -0.28
SOX3P41225 AL157996.1-201ENST00000624684 2299 ntBASIC13.3□□□□□ -0.28
SOX3P41225 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX3P41225 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX3P41225 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX3P41225 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SOX3P41225 FRMPD2B-201ENST00000431305 1347 ntBASIC13.3□□□□□ -0.28
SOX3P41225 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC13.3□□□□□ -0.28
SOX3P41225 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SOX3P41225 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC13.3□□□□□ -0.28
SOX3P41225 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC13.3□□□□□ -0.28
SOX3P41225 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
SOX3P41225 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SOX3P41225 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX3P41225 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SOX3P41225 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
SOX3P41225 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX3P41225 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC13.29□□□□□ -0.28
SOX3P41225 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX3P41225 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC13.29□□□□□ -0.28
SOX3P41225 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SOX3P41225 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC13.29□□□□□ -0.28
SOX3P41225 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC13.29□□□□□ -0.28
SOX3P41225 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC13.29□□□□□ -0.28
SOX3P41225 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
SOX3P41225 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC13.29□□□□□ -0.28
SOX3P41225 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX3P41225 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
SOX3P41225 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX3P41225 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX3P41225 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC13.29□□□□□ -0.28
SOX3P41225 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX3P41225 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX3P41225 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX3P41225 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX3P41225 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX3P41225 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC13.29□□□□□ -0.28
SOX3P41225 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC13.29□□□□□ -0.28
SOX3P41225 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC13.29□□□□□ -0.28
SOX3P41225 RN7SL720P-201ENST00000488178 304 ntBASIC13.29□□□□□ -0.28
SOX3P41225 IMP3P2-201ENST00000489760 475 ntBASIC13.29□□□□□ -0.28
SOX3P41225 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC13.29□□□□□ -0.28
SOX3P41225 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC13.29□□□□□ -0.28
SOX3P41225 POU5F1P2-201ENST00000521750 823 ntBASIC13.29□□□□□ -0.28
SOX3P41225 NAT9-211ENST00000580632 799 ntTSL 3 BASIC13.29□□□□□ -0.28
SOX3P41225 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC13.29□□□□□ -0.28
SOX3P41225 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC13.29□□□□□ -0.28
SOX3P41225 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC13.29□□□□□ -0.28
SOX3P41225 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC13.29□□□□□ -0.28
SOX3P41225 AL591471.1-201ENST00000621855 229 ntBASIC13.29□□□□□ -0.28
SOX3P41225 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX3P41225 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
SOX3P41225 AC064801.2-201ENST00000625052 1303 ntBASIC13.29□□□□□ -0.28
SOX3P41225 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC13.29□□□□□ -0.28
SOX3P41225 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SOX3P41225 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC13.29□□□□□ -0.28
SOX3P41225 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX3P41225 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
SOX3P41225 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX3P41225 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
SOX3P41225 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SOX3P41225 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
SOX3P41225 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC13.29□□□□□ -0.28
SOX3P41225 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SOX3P41225 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SOX3P41225 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
SOX3P41225 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC13.28□□□□□ -0.28
SOX3P41225 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC13.28□□□□□ -0.28
SOX3P41225 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX3P41225 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
SOX3P41225 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC13.28□□□□□ -0.28
SOX3P41225 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SOX3P41225 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX3P41225 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC13.28□□□□□ -0.28
SOX3P41225 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX3P41225 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX3P41225 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC13.28□□□□□ -0.28
SOX3P41225 AC015909.3-201ENST00000572855 1794 ntBASIC13.28□□□□□ -0.28
SOX3P41225 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX3P41225 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX3P41225 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX3P41225 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
SOX3P41225 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX3P41225 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX3P41225 RNA5SP359-201ENST00000364838 113 ntBASIC13.28□□□□□ -0.28
SOX3P41225 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SOX3P41225 LBH-202ENST00000401506 485 ntTSL 3 BASIC13.28□□□□□ -0.28
SOX3P41225 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC13.28□□□□□ -0.28
SOX3P41225 AC007274.2-201ENST00000421675 662 ntBASIC13.28□□□□□ -0.28
SOX3P41225 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC13.28□□□□□ -0.28
SOX3P41225 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
SOX3P41225 AL353637.1-201ENST00000451571 732 ntBASIC13.28□□□□□ -0.28
SOX3P41225 PFN2-206ENST00000461930 606 ntTSL 4 BASIC13.28□□□□□ -0.28
SOX3P41225 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC13.28□□□□□ -0.28
SOX3P41225 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms