Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC15.57■□□□□ 0.08
TPM1P09493 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
TPM1P09493 TEX35-204ENST00000367642 2452 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
TPM1P09493 REXO1L6P-201ENST00000603433 1515 ntBASIC15.57■□□□□ 0.08
TPM1P09493 LINC01165-201ENST00000445190 1623 ntBASIC15.57■□□□□ 0.08
TPM1P09493 LPO-203ENST00000421678 2729 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
TPM1P09493 GOLGA6L10-209ENST00000621197 4160 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
TPM1P09493 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC15.57■□□□□ 0.08
TPM1P09493 CACNA1F-202ENST00000376251 5813 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TPM1P09493 AC125807.2-201ENST00000513358 3514 ntBASIC15.56■□□□□ 0.08
TPM1P09493 AC004623.1-201ENST00000624592 2127 ntBASIC15.56■□□□□ 0.08
TPM1P09493 AGAP2-203ENST00000547588 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM1P09493 AC006001.3-201ENST00000449307 7092 ntTSL 3 BASIC15.56■□□□□ 0.08
TPM1P09493 CD38-201ENST00000226279 5668 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM1P09493 SIRPA-203ENST00000400068 4201 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM1P09493 PLAT-203ENST00000429089 2599 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
TPM1P09493 EPM2AIP1-201ENST00000322716 8126 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
TPM1P09493 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
TPM1P09493 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM1P09493 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM1P09493 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC15.56■□□□□ 0.08
TPM1P09493 ANKRD36B-201ENST00000258459 5986 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
TPM1P09493 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TPM1P09493 ZBTB12BP-201ENST00000314232 1122 ntBASIC15.56■□□□□ 0.08
TPM1P09493 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM1P09493 RBM38-204ENST00000371219 760 ntTSL 2 BASIC15.56■□□□□ 0.08
TPM1P09493 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
TPM1P09493 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
TPM1P09493 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.56■□□□□ 0.08
TPM1P09493 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.56■□□□□ 0.08
TPM1P09493 AL590640.2-201ENST00000457038 527 ntBASIC15.56■□□□□ 0.08
TPM1P09493 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC15.56■□□□□ 0.08
TPM1P09493 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC15.56■□□□□ 0.08
TPM1P09493 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC15.56■□□□□ 0.08
TPM1P09493 AP003171.2-201ENST00000528208 925 ntBASIC15.56■□□□□ 0.08
TPM1P09493 RFPL4AP1-201ENST00000530883 850 ntBASIC15.56■□□□□ 0.08
TPM1P09493 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC15.56■□□□□ 0.08
TPM1P09493 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
TPM1P09493 RBM8B-201ENST00000555532 525 ntBASIC15.56■□□□□ 0.08
TPM1P09493 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC15.56■□□□□ 0.08
TPM1P09493 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.56■□□□□ 0.08
TPM1P09493 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC15.56■□□□□ 0.08
TPM1P09493 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TPM1P09493 ARL16-210ENST00000574938 751 ntTSL 2 BASIC15.56■□□□□ 0.08
TPM1P09493 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC15.56■□□□□ 0.08
TPM1P09493 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.56■□□□□ 0.08
TPM1P09493 ZACNP1-201ENST00000612259 710 ntBASIC15.56■□□□□ 0.08
TPM1P09493 AC139530.3-201ENST00000620344 690 ntBASIC15.56■□□□□ 0.08
TPM1P09493 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TPM1P09493 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM1P09493 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM1P09493 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.56■□□□□ 0.08
TPM1P09493 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TPM1P09493 SHC1P1-201ENST00000425230 1745 ntBASIC15.56■□□□□ 0.08
TPM1P09493 MANBAL-201ENST00000373605 1915 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
TPM1P09493 ITPRIPL1-204ENST00000439118 1946 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TPM1P09493 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC15.56■□□□□ 0.08
TPM1P09493 GOLGA2P5-201ENST00000266746 2395 ntBASIC15.56■□□□□ 0.08
TPM1P09493 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM1P09493 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TPM1P09493 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC15.56■□□□□ 0.08
TPM1P09493 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC15.56■□□□□ 0.08
TPM1P09493 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TPM1P09493 GPR173-201ENST00000332582 4485 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM1P09493 SLC44A3-AS1-215ENST00000634870 5956 ntTSL 5 BASIC15.55■□□□□ 0.08
TPM1P09493 CRY2-212ENST00000616623 4204 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 DGKZ-204ENST00000454345 4086 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
TPM1P09493 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 RERG-204ENST00000536465 2134 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
TPM1P09493 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC15.55■□□□□ 0.08
TPM1P09493 PTCD1-201ENST00000292478 5582 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC15.55■□□□□ 0.08
TPM1P09493 MSNP1-201ENST00000511640 1732 ntBASIC15.55■□□□□ 0.08
TPM1P09493 CCT8L1P-201ENST00000465400 1674 ntBASIC15.55■□□□□ 0.08
TPM1P09493 SOGA3-207ENST00000481848 11464 ntAPPRIS P5 TSL 5 BASIC15.55■□□□□ 0.08
TPM1P09493 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC15.55■□□□□ 0.08
TPM1P09493 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.55■□□□□ 0.08
TPM1P09493 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
TPM1P09493 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
TPM1P09493 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 AC010141.1-201ENST00000411585 623 ntBASIC15.55■□□□□ 0.08
TPM1P09493 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.55■□□□□ 0.08
TPM1P09493 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC15.55■□□□□ 0.08
TPM1P09493 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
TPM1P09493 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
TPM1P09493 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TPM1P09493 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms