Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 PXK-210ENST00000479241 2817 ntTSL 2 BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 AC079781.5-202ENST00000641784 3743 ntBASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 AC078991.1-201ENST00000437297 610 ntBASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 AC006335.1-201ENST00000445200 547 ntBASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 MIR4754-201ENST00000582477 89 ntBASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 AC012044.1-201ENST00000603431 297 ntBASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 FAM90A2P-201ENST00000511144 1395 ntBASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 FAM90A25P-201ENST00000528404 1395 ntBASIC14.27□□□□□ -0.13
SHROOM3Q8TF72 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 GOLGA8UP-201ENST00000527159 1755 ntBASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 DDC-204ENST00000426377 1700 ntTSL 3 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 FUK-202ENST00000378912 3925 ntTSL 2 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 AC026320.2-201ENST00000434379 478 ntBASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC14.26□□□□□ -0.13
SHROOM3Q8TF72 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 NSD1-211ENST00000511258 809 ntTSL 3 BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 AC138894.2-201ENST00000602838 371 ntBASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 AC108024.1-201ENST00000626286 1721 ntBASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
SHROOM3Q8TF72 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms