Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
RC3H1Q5TC82 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC17.26■□□□□ 0.35
RC3H1Q5TC82 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RC3H1Q5TC82 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RC3H1Q5TC82 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RC3H1Q5TC82 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
RC3H1Q5TC82 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RC3H1Q5TC82 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RC3H1Q5TC82 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RC3H1Q5TC82 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.26■□□□□ 0.35
RC3H1Q5TC82 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
RC3H1Q5TC82 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 EFHB-202ENST00000344838 2389 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 APEX1-201ENST00000216714 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 PAEP-201ENST00000277508 821 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 FAM213A-204ENST00000372188 829 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 RBMX2P5-201ENST00000424312 969 ntBASIC17.25■□□□□ 0.35
RC3H1Q5TC82 HDHD5-AS1-202ENST00000431923 616 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 RAI1-AS1-201ENST00000443696 724 ntTSL 5 BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 RPSAP16-201ENST00000447583 821 ntBASIC17.25■□□□□ 0.35
RC3H1Q5TC82 RN7SL173P-201ENST00000461853 292 ntBASIC17.25■□□□□ 0.35
RC3H1Q5TC82 ARHGEF26-AS1-203ENST00000480639 582 ntTSL 2 BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 AC090200.1-201ENST00000522918 590 ntTSL 2 BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 TRAPPC4-212ENST00000533058 1209 ntTSL 2 BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 AC142086.5-202ENST00000562500 217 ntBASIC17.25■□□□□ 0.35
RC3H1Q5TC82 RBMX-209ENST00000565438 1292 ntTSL 5 BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 NRSN2-206ENST00000608736 712 ntTSL 3 BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 AC034205.3-201ENST00000603595 1376 ntBASIC17.25■□□□□ 0.35
RC3H1Q5TC82 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 SNRPN-205ENST00000400100 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 HIST2H2BE-201ENST00000369155 2194 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RC3H1Q5TC82 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 FAM83A-AS1-202ENST00000520576 1347 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 PLA2G2E-201ENST00000375116 785 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 ZBTB46-AS1-201ENST00000435912 533 ntTSL 3 BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 OR4C14P-201ENST00000440929 923 ntBASIC17.24■□□□□ 0.35
RC3H1Q5TC82 DUX4L31-201ENST00000446466 1136 ntBASIC17.24■□□□□ 0.35
RC3H1Q5TC82 RPL35P1-201ENST00000450819 370 ntBASIC17.24■□□□□ 0.35
RC3H1Q5TC82 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 HAND2-AS1-208ENST00000504740 837 ntTSL 3 BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 TOB1-AS1-202ENST00000514358 690 ntTSL 5 BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 LINC00643-202ENST00000553426 526 ntTSL 3 BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 DLX6-203ENST00000555308 666 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 PIGH-210ENST00000560722 903 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 AC211476.2-201ENST00000608799 708 ntBASIC17.24■□□□□ 0.35
RC3H1Q5TC82 AC083798.2-202ENST00000609469 553 ntTSL 4 BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 TMEM230-211ENST00000615008 594 ntTSL 4 BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 AC244097.1-201ENST00000621631 1216 ntBASIC17.24■□□□□ 0.35
RC3H1Q5TC82 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 ANAPC15-203ENST00000502597 1481 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RC3H1Q5TC82 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC17.23■□□□□ 0.35
RC3H1Q5TC82 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
RC3H1Q5TC82 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RC3H1Q5TC82 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms