Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC13.03□□□□□ -0.32
RNF4P78317 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
RNF4P78317 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC13.03□□□□□ -0.32
RNF4P78317 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC13.03□□□□□ -0.32
RNF4P78317 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC13.03□□□□□ -0.32
RNF4P78317 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC13.03□□□□□ -0.32
RNF4P78317 AL512306.1-201ENST00000432698 848 ntBASIC13.03□□□□□ -0.32
RNF4P78317 AK2P2-201ENST00000439142 405 ntBASIC13.03□□□□□ -0.32
RNF4P78317 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC13.03□□□□□ -0.32
RNF4P78317 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC13.03□□□□□ -0.32
RNF4P78317 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC13.03□□□□□ -0.32
RNF4P78317 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 POLD4-208ENST00000532830 904 ntTSL 3 BASIC13.03□□□□□ -0.32
RNF4P78317 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC13.03□□□□□ -0.32
RNF4P78317 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
RNF4P78317 AC138701.2-201ENST00000553634 226 ntBASIC13.03□□□□□ -0.32
RNF4P78317 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC13.03□□□□□ -0.32
RNF4P78317 AC145285.5-201ENST00000562217 361 ntBASIC13.03□□□□□ -0.32
RNF4P78317 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC13.03□□□□□ -0.32
RNF4P78317 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC13.03□□□□□ -0.32
RNF4P78317 AC138894.2-201ENST00000602838 371 ntBASIC13.03□□□□□ -0.32
RNF4P78317 AC009145.4-201ENST00000625119 1294 ntBASIC13.03□□□□□ -0.32
RNF4P78317 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC13.03□□□□□ -0.32
RNF4P78317 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 AC074138.1-201ENST00000611182 1303 ntBASIC13.03□□□□□ -0.32
RNF4P78317 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
RNF4P78317 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC13.03□□□□□ -0.32
RNF4P78317 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC13.03□□□□□ -0.32
RNF4P78317 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
RNF4P78317 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC13.03□□□□□ -0.32
RNF4P78317 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC13.03□□□□□ -0.32
RNF4P78317 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
RNF4P78317 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RNF4P78317 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
RNF4P78317 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
RNF4P78317 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
RNF4P78317 HAL-202ENST00000538703 2637 ntTSL 2 BASIC13.02□□□□□ -0.32
RNF4P78317 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
RNF4P78317 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RNF4P78317 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RNF4P78317 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
RNF4P78317 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RNF4P78317 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RNF4P78317 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC13.02□□□□□ -0.33
RNF4P78317 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC13.02□□□□□ -0.33
RNF4P78317 NOC2LP1-201ENST00000450578 752 ntBASIC13.02□□□□□ -0.33
RNF4P78317 SCARNA12-201ENST00000459155 270 ntBASIC13.02□□□□□ -0.33
RNF4P78317 RN7SL788P-201ENST00000460504 316 ntBASIC13.02□□□□□ -0.33
RNF4P78317 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC13.02□□□□□ -0.33
RNF4P78317 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
RNF4P78317 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC13.02□□□□□ -0.33
RNF4P78317 ORAOV1P1-201ENST00000503108 395 ntBASIC13.02□□□□□ -0.33
RNF4P78317 MRPL22P1-201ENST00000505398 616 ntBASIC13.02□□□□□ -0.33
RNF4P78317 AC095040.1-201ENST00000513286 675 ntBASIC13.02□□□□□ -0.33
RNF4P78317 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC13.02□□□□□ -0.33
RNF4P78317 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC13.02□□□□□ -0.33
RNF4P78317 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC13.02□□□□□ -0.33
RNF4P78317 FOS-204ENST00000554617 796 ntTSL 2 BASIC13.02□□□□□ -0.33
RNF4P78317 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC13.02□□□□□ -0.33
RNF4P78317 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC13.02□□□□□ -0.33
RNF4P78317 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC13.02□□□□□ -0.33
RNF4P78317 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RNF4P78317 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RNF4P78317 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RNF4P78317 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RNF4P78317 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RNF4P78317 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RNF4P78317 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
RNF4P78317 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
RNF4P78317 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
RNF4P78317 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
RNF4P78317 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC13.02□□□□□ -0.33
RNF4P78317 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RNF4P78317 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
RNF4P78317 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RNF4P78317 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.33
RNF4P78317 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
RNF4P78317 EML1-203ENST00000334192 4064 ntTSL 5 BASIC13.02□□□□□ -0.33
RNF4P78317 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
RNF4P78317 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
RNF4P78317 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
RNF4P78317 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
RNF4P78317 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
RNF4P78317 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms