Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 SLC24A4-204ENST00000531433 4531 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
CLRN1P58418 CYB5RL-201ENST00000287899 5777 ntTSL 3 BASIC12.62□□□□□ -0.39
CLRN1P58418 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC12.62□□□□□ -0.39
CLRN1P58418 GALNT7-201ENST00000265000 4307 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
CLRN1P58418 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 LINC01815-202ENST00000641468 1409 ntBASIC12.62□□□□□ -0.39
CLRN1P58418 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC12.62□□□□□ -0.39
CLRN1P58418 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC12.62□□□□□ -0.39
CLRN1P58418 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC12.62□□□□□ -0.39
CLRN1P58418 CHD5-201ENST00000262450 9646 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 SMARCA4-205ENST00000450717 5506 ntTSL 5 BASIC12.61□□□□□ -0.39
CLRN1P58418 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
CLRN1P58418 BCL2L11-221ENST00000621302 5224 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
CLRN1P58418 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
CLRN1P58418 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC12.61□□□□□ -0.39
CLRN1P58418 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 ABR-202ENST00000302538 5289 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC12.61□□□□□ -0.39
CLRN1P58418 CEP85L-203ENST00000368491 7673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 RPL13AP3-202ENST00000494676 1473 ntBASIC12.61□□□□□ -0.39
CLRN1P58418 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.39
CLRN1P58418 ROBO1-201ENST00000436010 7501 ntTSL 5 BASIC12.61□□□□□ -0.39
CLRN1P58418 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
CLRN1P58418 STK3-218ENST00000617590 2485 ntTSL 5 BASIC12.61□□□□□ -0.39
CLRN1P58418 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 AFDN-206ENST00000392112 7459 ntTSL 5 BASIC12.61□□□□□ -0.39
CLRN1P58418 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC12.61□□□□□ -0.39
CLRN1P58418 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
CLRN1P58418 HNRNPA1P41-201ENST00000397777 928 ntBASIC12.61□□□□□ -0.39
CLRN1P58418 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC12.61□□□□□ -0.39
CLRN1P58418 MIR1908-201ENST00000410394 80 ntBASIC12.61□□□□□ -0.39
CLRN1P58418 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC12.61□□□□□ -0.39
CLRN1P58418 NKAIN1P1-201ENST00000435754 582 ntBASIC12.61□□□□□ -0.39
CLRN1P58418 AC011742.3-201ENST00000439053 820 ntBASIC12.61□□□□□ -0.39
CLRN1P58418 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC12.61□□□□□ -0.39
CLRN1P58418 AC004898.1-201ENST00000451057 766 ntBASIC12.61□□□□□ -0.39
CLRN1P58418 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC12.61□□□□□ -0.39
CLRN1P58418 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC12.61□□□□□ -0.39
CLRN1P58418 AC125604.1-201ENST00000496255 707 ntBASIC12.61□□□□□ -0.39
CLRN1P58418 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC12.61□□□□□ -0.39
CLRN1P58418 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC12.61□□□□□ -0.39
CLRN1P58418 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
CLRN1P58418 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
CLRN1P58418 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC12.61□□□□□ -0.39
CLRN1P58418 AC138649.2-201ENST00000615886 705 ntBASIC12.61□□□□□ -0.39
CLRN1P58418 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC12.61□□□□□ -0.39
CLRN1P58418 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC12.61□□□□□ -0.39
CLRN1P58418 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
CLRN1P58418 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 PDE7B-203ENST00000615259 5234 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
CLRN1P58418 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 RB1-201ENST00000267163 4840 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 MIR497HG-202ENST00000572453 3838 ntBASIC12.61□□□□□ -0.39
CLRN1P58418 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
CLRN1P58418 AMT-256ENST00000638063 1783 ntTSL 5 BASIC12.61□□□□□ -0.39
CLRN1P58418 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CLRN1P58418 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CLRN1P58418 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC12.6□□□□□ -0.39
CLRN1P58418 FBXO32-203ENST00000517956 6744 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CLRN1P58418 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CLRN1P58418 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CLRN1P58418 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CLRN1P58418 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC12.6□□□□□ -0.39
CLRN1P58418 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CLRN1P58418 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
CLRN1P58418 ADGRD1-201ENST00000261654 5168 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CLRN1P58418 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
CLRN1P58418 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
CLRN1P58418 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
CLRN1P58418 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC12.6□□□□□ -0.39
CLRN1P58418 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CLRN1P58418 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
CLRN1P58418 RN7SKP214-201ENST00000364208 315 ntBASIC12.6□□□□□ -0.39
CLRN1P58418 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CLRN1P58418 NCR3-202ENST00000376071 541 ntTSL 5 BASIC12.6□□□□□ -0.39
CLRN1P58418 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CLRN1P58418 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms