Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HDAC4P56524 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HDAC4P56524 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HDAC4P56524 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HDAC4P56524 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.05
HDAC4P56524 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC14.71□□□□□ -0.05
HDAC4P56524 AC105206.1-202ENST00000314927 2368 ntBASIC14.71□□□□□ -0.05
HDAC4P56524 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HDAC4P56524 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC14.71□□□□□ -0.05
HDAC4P56524 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HDAC4P56524 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HDAC4P56524 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC14.71□□□□□ -0.05
HDAC4P56524 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
HDAC4P56524 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
HDAC4P56524 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HDAC4P56524 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HDAC4P56524 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC14.71□□□□□ -0.05
HDAC4P56524 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
HDAC4P56524 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
HDAC4P56524 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC14.71□□□□□ -0.05
HDAC4P56524 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC14.71□□□□□ -0.05
HDAC4P56524 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HDAC4P56524 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
HDAC4P56524 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HDAC4P56524 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HDAC4P56524 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
HDAC4P56524 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HDAC4P56524 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC14.71□□□□□ -0.05
HDAC4P56524 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HDAC4P56524 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HDAC4P56524 KRTAP19-9P-201ENST00000421795 191 ntBASIC14.71□□□□□ -0.05
HDAC4P56524 CALR4P-201ENST00000431943 946 ntBASIC14.71□□□□□ -0.05
HDAC4P56524 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
HDAC4P56524 AC005077.2-201ENST00000449786 690 ntBASIC14.71□□□□□ -0.05
HDAC4P56524 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC14.71□□□□□ -0.05
HDAC4P56524 RN7SL11P-201ENST00000471305 293 ntBASIC14.71□□□□□ -0.05
HDAC4P56524 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC14.71□□□□□ -0.05
HDAC4P56524 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
HDAC4P56524 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC14.71□□□□□ -0.05
HDAC4P56524 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC14.71□□□□□ -0.05
HDAC4P56524 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC14.71□□□□□ -0.05
HDAC4P56524 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC14.71□□□□□ -0.05
HDAC4P56524 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC14.71□□□□□ -0.05
HDAC4P56524 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
HDAC4P56524 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
HDAC4P56524 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC14.71□□□□□ -0.05
HDAC4P56524 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC14.71□□□□□ -0.05
HDAC4P56524 MIR6769A-201ENST00000617340 73 ntBASIC14.71□□□□□ -0.05
HDAC4P56524 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HDAC4P56524 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HDAC4P56524 AC027612.1-201ENST00000445234 2395 ntBASIC14.71□□□□□ -0.05
HDAC4P56524 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.05
HDAC4P56524 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC14.71□□□□□ -0.05
HDAC4P56524 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
HDAC4P56524 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
HDAC4P56524 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
HDAC4P56524 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
HDAC4P56524 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
HDAC4P56524 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HDAC4P56524 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HDAC4P56524 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HDAC4P56524 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HDAC4P56524 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HDAC4P56524 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HDAC4P56524 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HDAC4P56524 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC14.7□□□□□ -0.06
HDAC4P56524 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HDAC4P56524 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HDAC4P56524 AC008620.2-201ENST00000510294 1569 ntBASIC14.7□□□□□ -0.06
HDAC4P56524 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HDAC4P56524 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
HDAC4P56524 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC14.7□□□□□ -0.06
HDAC4P56524 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HDAC4P56524 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HDAC4P56524 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
HDAC4P56524 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HDAC4P56524 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC14.7□□□□□ -0.06
HDAC4P56524 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC14.7□□□□□ -0.06
HDAC4P56524 BANF1P3-201ENST00000412556 261 ntBASIC14.7□□□□□ -0.06
HDAC4P56524 BX679664.3-201ENST00000414070 555 ntBASIC14.7□□□□□ -0.06
HDAC4P56524 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC14.7□□□□□ -0.06
HDAC4P56524 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC14.7□□□□□ -0.06
HDAC4P56524 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HDAC4P56524 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HDAC4P56524 PFN2-206ENST00000461930 606 ntTSL 4 BASIC14.7□□□□□ -0.06
HDAC4P56524 AC113935.1-201ENST00000471722 555 ntBASIC14.7□□□□□ -0.06
HDAC4P56524 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC14.7□□□□□ -0.06
HDAC4P56524 AC024681.1-201ENST00000521917 487 ntBASIC14.7□□□□□ -0.06
HDAC4P56524 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
HDAC4P56524 PHBP15-201ENST00000574228 665 ntBASIC14.7□□□□□ -0.06
HDAC4P56524 AL109837.1-201ENST00000603272 613 ntBASIC14.7□□□□□ -0.06
HDAC4P56524 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC14.7□□□□□ -0.06
HDAC4P56524 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HDAC4P56524 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14.7□□□□□ -0.06
HDAC4P56524 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC14.7□□□□□ -0.06
HDAC4P56524 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HDAC4P56524 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HDAC4P56524 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC14.7□□□□□ -0.06
HDAC4P56524 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HDAC4P56524 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms