Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA1P55317 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC13.62□□□□□ -0.23
FOXA1P55317 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC13.62□□□□□ -0.23
FOXA1P55317 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC13.62□□□□□ -0.23
FOXA1P55317 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC13.62□□□□□ -0.23
FOXA1P55317 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA1P55317 EIF4HP1-201ENST00000453115 687 ntBASIC13.62□□□□□ -0.23
FOXA1P55317 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
FOXA1P55317 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC13.62□□□□□ -0.23
FOXA1P55317 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA1P55317 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC13.62□□□□□ -0.23
FOXA1P55317 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC13.62□□□□□ -0.23
FOXA1P55317 HILS1-202ENST00000545329 423 ntBASIC13.62□□□□□ -0.23
FOXA1P55317 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA1P55317 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC13.62□□□□□ -0.23
FOXA1P55317 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
FOXA1P55317 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC13.62□□□□□ -0.23
FOXA1P55317 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
FOXA1P55317 MIR3615-201ENST00000581999 87 ntBASIC13.62□□□□□ -0.23
FOXA1P55317 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC13.62□□□□□ -0.23
FOXA1P55317 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC13.62□□□□□ -0.23
FOXA1P55317 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC13.62□□□□□ -0.23
FOXA1P55317 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
FOXA1P55317 DNAJA4-203ENST00000394855 3245 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA1P55317 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA1P55317 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA1P55317 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA1P55317 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA1P55317 AC073862.5-201ENST00000624129 2027 ntBASIC13.62□□□□□ -0.23
FOXA1P55317 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA1P55317 BCAS3-221ENST00000588874 2948 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
FOXA1P55317 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA1P55317 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC13.62□□□□□ -0.23
FOXA1P55317 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA1P55317 ING4-201ENST00000341550 1709 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA1P55317 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA1P55317 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA1P55317 SARS-202ENST00000369923 1882 ntTSL 5 BASIC13.61□□□□□ -0.23
FOXA1P55317 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA1P55317 AC021218.1-201ENST00000377722 2536 ntTSL 2 BASIC13.61□□□□□ -0.23
FOXA1P55317 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA1P55317 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA1P55317 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA1P55317 AL118506.1-201ENST00000601296 3082 ntBASIC13.61□□□□□ -0.23
FOXA1P55317 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC13.61□□□□□ -0.23
FOXA1P55317 PTPN5-205ENST00000477854 2826 ntTSL 5 BASIC13.61□□□□□ -0.23
FOXA1P55317 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA1P55317 AC060814.4-201ENST00000594169 2163 ntBASIC13.61□□□□□ -0.23
FOXA1P55317 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA1P55317 ANGPTL2-201ENST00000373417 2575 ntTSL 2 BASIC13.61□□□□□ -0.23
FOXA1P55317 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
FOXA1P55317 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC13.61□□□□□ -0.23
FOXA1P55317 NDRG4-236ENST00000566192 3265 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA1P55317 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC13.61□□□□□ -0.23
FOXA1P55317 NOBOX-201ENST00000467773 2076 ntTSL 5 BASIC13.61□□□□□ -0.23
FOXA1P55317 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC13.61□□□□□ -0.23
FOXA1P55317 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA1P55317 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
FOXA1P55317 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC13.61□□□□□ -0.23
FOXA1P55317 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC13.61□□□□□ -0.23
FOXA1P55317 MIR663B-201ENST00000408361 115 ntBASIC13.61□□□□□ -0.23
FOXA1P55317 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC13.61□□□□□ -0.23
FOXA1P55317 AC078875.1-201ENST00000431907 724 ntBASIC13.61□□□□□ -0.23
FOXA1P55317 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC13.61□□□□□ -0.23
FOXA1P55317 AC011742.3-201ENST00000439053 820 ntBASIC13.61□□□□□ -0.23
FOXA1P55317 AC022210.1-201ENST00000449856 793 ntBASIC13.61□□□□□ -0.23
FOXA1P55317 Z93015.1-201ENST00000451718 390 ntBASIC13.61□□□□□ -0.23
FOXA1P55317 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC13.61□□□□□ -0.23
FOXA1P55317 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC13.61□□□□□ -0.23
FOXA1P55317 SNORD3B-2-202ENST00000571722 791 ntBASIC13.61□□□□□ -0.23
FOXA1P55317 SKA2-205ENST00000580541 689 ntTSL 3 BASIC13.61□□□□□ -0.23
FOXA1P55317 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
FOXA1P55317 AC010328.2-201ENST00000597698 1111 ntBASIC13.61□□□□□ -0.23
FOXA1P55317 AL161773.1-201ENST00000624845 863 ntBASIC13.61□□□□□ -0.23
FOXA1P55317 AC068587.8-201ENST00000641239 219 ntBASIC13.61□□□□□ -0.23
FOXA1P55317 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
FOXA1P55317 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA1P55317 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA1P55317 LINC01114-202ENST00000424321 2112 ntTSL 2 BASIC13.61□□□□□ -0.23
FOXA1P55317 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC13.61□□□□□ -0.23
FOXA1P55317 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA1P55317 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA1P55317 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC13.61□□□□□ -0.23
FOXA1P55317 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA1P55317 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA1P55317 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC13.61□□□□□ -0.23
FOXA1P55317 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA1P55317 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA1P55317 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
FOXA1P55317 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
FOXA1P55317 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC13.6□□□□□ -0.23
FOXA1P55317 HERPUD1-204ENST00000439977 2946 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA1P55317 FCHO1-221ENST00000597512 2934 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA1P55317 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
FOXA1P55317 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA1P55317 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA1P55317 CDC20B-202ENST00000322374 1679 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA1P55317 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
FOXA1P55317 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
FOXA1P55317 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms