Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC14.38□□□□□ -0.11
COL9A1P20849 ESR1-214ENST00000638569 132 ntTSL 5 BASIC14.38□□□□□ -0.11
COL9A1P20849 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL9A1P20849 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC14.38□□□□□ -0.11
COL9A1P20849 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL9A1P20849 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.38□□□□□ -0.11
COL9A1P20849 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL9A1P20849 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL9A1P20849 SYT14P1-202ENST00000600441 1448 ntBASIC14.38□□□□□ -0.11
COL9A1P20849 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC14.38□□□□□ -0.11
COL9A1P20849 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL9A1P20849 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL9A1P20849 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
COL9A1P20849 AC126177.1-201ENST00000547829 2218 ntBASIC14.38□□□□□ -0.11
COL9A1P20849 KRT18P40-201ENST00000599859 1571 ntBASIC14.38□□□□□ -0.11
COL9A1P20849 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL9A1P20849 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL9A1P20849 ENTPD3-204ENST00000456402 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL9A1P20849 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL9A1P20849 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.37□□□□□ -0.11
COL9A1P20849 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC14.37□□□□□ -0.11
COL9A1P20849 CICP14-201ENST00000629111 2732 ntBASIC14.37□□□□□ -0.11
COL9A1P20849 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC14.37□□□□□ -0.11
COL9A1P20849 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
COL9A1P20849 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC14.37□□□□□ -0.11
COL9A1P20849 CACNB4-201ENST00000201943 1389 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
COL9A1P20849 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
COL9A1P20849 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 AL365181.1-201ENST00000564032 1828 ntBASIC14.37□□□□□ -0.11
COL9A1P20849 S100A2-202ENST00000368708 998 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC14.37□□□□□ -0.11
COL9A1P20849 ETFRF1-201ENST00000381356 1134 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 SLC2A11-208ENST00000405847 730 ntTSL 2 BASIC14.37□□□□□ -0.11
COL9A1P20849 LINC01494-201ENST00000419511 1011 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 OR2X1P-201ENST00000421144 687 ntBASIC14.37□□□□□ -0.11
COL9A1P20849 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 AL133351.2-201ENST00000437718 484 ntTSL 2 BASIC14.37□□□□□ -0.11
COL9A1P20849 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC14.37□□□□□ -0.11
COL9A1P20849 LRRC75A-AS1-208ENST00000480811 968 ntTSL 2 BASIC14.37□□□□□ -0.11
COL9A1P20849 FAM153C-208ENST00000511189 926 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
COL9A1P20849 CSNK1A1-207ENST00000515768 1098 ntAPPRIS P4 TSL 5 BASIC14.37□□□□□ -0.11
COL9A1P20849 AC122713.1-201ENST00000518368 1015 ntBASIC14.37□□□□□ -0.11
COL9A1P20849 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 AP003170.2-201ENST00000544730 786 ntBASIC14.37□□□□□ -0.11
COL9A1P20849 AC073611.1-201ENST00000550263 647 ntTSL 2 BASIC14.37□□□□□ -0.11
COL9A1P20849 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 DLX6-203ENST00000555308 666 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
COL9A1P20849 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC14.37□□□□□ -0.11
COL9A1P20849 UBA52-213ENST00000599551 707 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
COL9A1P20849 AL121992.3-201ENST00000606186 346 ntBASIC14.37□□□□□ -0.11
COL9A1P20849 AC104506.1-201ENST00000609247 429 ntBASIC14.37□□□□□ -0.11
COL9A1P20849 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC14.37□□□□□ -0.11
COL9A1P20849 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC14.37□□□□□ -0.11
COL9A1P20849 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
COL9A1P20849 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.37□□□□□ -0.11
COL9A1P20849 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 LINC00115-201ENST00000473798 1317 ntBASIC14.37□□□□□ -0.11
COL9A1P20849 AC064801.2-201ENST00000625052 1303 ntBASIC14.37□□□□□ -0.11
COL9A1P20849 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL9A1P20849 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.37□□□□□ -0.11
COL9A1P20849 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
COL9A1P20849 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL9A1P20849 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC14.36□□□□□ -0.11
COL9A1P20849 MTCO1P15-201ENST00000529569 1526 ntBASIC14.36□□□□□ -0.11
COL9A1P20849 ELP4-223ENST00000640342 1392 ntTSL 5 BASIC14.36□□□□□ -0.11
COL9A1P20849 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL9A1P20849 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC14.36□□□□□ -0.11
COL9A1P20849 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL9A1P20849 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL9A1P20849 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.36□□□□□ -0.11
COL9A1P20849 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL9A1P20849 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL9A1P20849 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL9A1P20849 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.36□□□□□ -0.11
COL9A1P20849 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL9A1P20849 CSRP2-201ENST00000311083 943 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL9A1P20849 LSM2-208ENST00000375661 876 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL9A1P20849 GCNT6-201ENST00000379591 934 ntBASIC14.36□□□□□ -0.11
COL9A1P20849 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL9A1P20849 KDM5C-IT1-201ENST00000412242 755 ntTSL 5 BASIC14.36□□□□□ -0.11
COL9A1P20849 FAM21EP-201ENST00000417804 985 ntBASIC14.36□□□□□ -0.11
COL9A1P20849 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC14.36□□□□□ -0.11
COL9A1P20849 AP000281.2-201ENST00000427911 384 ntTSL 3 BASIC14.36□□□□□ -0.11
COL9A1P20849 C3orf84-201ENST00000432035 669 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
COL9A1P20849 BOLL-205ENST00000433157 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms