Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC13.94□□□□□ -0.18
COL6A3P12111 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC13.93□□□□□ -0.18
COL6A3P12111 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC13.93□□□□□ -0.18
COL6A3P12111 AP000487.2-201ENST00000324630 394 ntTSL 3 BASIC13.93□□□□□ -0.18
COL6A3P12111 KRTAP10-10-201ENST00000380095 1100 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
COL6A3P12111 ARL4A-202ENST00000396662 1296 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
COL6A3P12111 AC005822.1-201ENST00000414124 1034 ntBASIC13.93□□□□□ -0.18
COL6A3P12111 AL662791.4-201ENST00000445544 317 ntTSL 3 BASIC13.93□□□□□ -0.18
COL6A3P12111 RPL18AP2-201ENST00000450007 482 ntBASIC13.93□□□□□ -0.18
COL6A3P12111 AC073089.1-201ENST00000457546 214 ntBASIC13.93□□□□□ -0.18
COL6A3P12111 RN7SL105P-201ENST00000475661 299 ntBASIC13.93□□□□□ -0.18
COL6A3P12111 PAX5-209ENST00000520154 1255 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A3P12111 CNOT8-217ENST00000521450 1158 ntTSL 2 BASIC13.93□□□□□ -0.18
COL6A3P12111 BX547991.1-201ENST00000582543 1206 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A3P12111 AL031430.1-201ENST00000642067 1039 ntBASIC13.93□□□□□ -0.18
COL6A3P12111 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC13.93□□□□□ -0.18
COL6A3P12111 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A3P12111 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
COL6A3P12111 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A3P12111 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A3P12111 SLURP1-201ENST00000246515 537 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A3P12111 HIST1H3H-201ENST00000369163 1237 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
COL6A3P12111 SPANXD-201ENST00000370515 682 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A3P12111 CTLA4-203ENST00000427473 969 ntTSL 5 BASIC13.93□□□□□ -0.18
COL6A3P12111 AL512288.1-201ENST00000448015 491 ntTSL 5 BASIC13.93□□□□□ -0.18
COL6A3P12111 LSP1P3-201ENST00000449530 208 ntBASIC13.93□□□□□ -0.18
COL6A3P12111 AC002519.2-201ENST00000563575 539 ntTSL 4 BASIC13.93□□□□□ -0.18
COL6A3P12111 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC13.93□□□□□ -0.18
COL6A3P12111 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A3P12111 KRT8P24-201ENST00000560290 1559 ntBASIC13.93□□□□□ -0.18
COL6A3P12111 FAM49B-220ENST00000522250 1647 ntTSL 5 BASIC13.93□□□□□ -0.18
COL6A3P12111 ZNF669-204ENST00000448299 1718 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A3P12111 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A3P12111 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A3P12111 CD1A-201ENST00000289429 2096 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A3P12111 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC13.93□□□□□ -0.18
COL6A3P12111 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC13.93□□□□□ -0.18
COL6A3P12111 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC13.93□□□□□ -0.18
COL6A3P12111 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A3P12111 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC13.93□□□□□ -0.18
COL6A3P12111 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
COL6A3P12111 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
COL6A3P12111 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC13.93□□□□□ -0.18
COL6A3P12111 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A3P12111 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A3P12111 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A3P12111 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A3P12111 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A3P12111 AC073488.1-201ENST00000416620 1600 ntBASIC13.93□□□□□ -0.18
COL6A3P12111 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A3P12111 CBWD5-208ENST00000429800 1234 ntTSL 2 BASIC13.93□□□□□ -0.18
COL6A3P12111 AL606970.2-201ENST00000434596 470 ntTSL 3 BASIC13.93□□□□□ -0.18
COL6A3P12111 AC110753.1-201ENST00000505711 1022 ntBASIC13.93□□□□□ -0.18
COL6A3P12111 AP003392.3-201ENST00000531886 667 ntTSL 5 BASIC13.93□□□□□ -0.18
COL6A3P12111 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC13.93□□□□□ -0.18
COL6A3P12111 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC13.93□□□□□ -0.18
COL6A3P12111 FAM92B-203ENST00000629253 1011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A3P12111 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC13.92□□□□□ -0.18
COL6A3P12111 HPGD-204ENST00000504433 1910 ntTSL 2 BASIC13.92□□□□□ -0.18
COL6A3P12111 KIR3DL3-201ENST00000291860 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A3P12111 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
COL6A3P12111 NPL-205ENST00000367555 1536 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A3P12111 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A3P12111 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
COL6A3P12111 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC13.92□□□□□ -0.18
COL6A3P12111 PLPP4-201ENST00000369073 1135 ntTSL 5 BASIC13.92□□□□□ -0.18
COL6A3P12111 AP000346.2-201ENST00000430707 906 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A3P12111 AC009404.1-202ENST00000439955 968 ntTSL 3 BASIC13.92□□□□□ -0.18
COL6A3P12111 LINC01606-208ENST00000521653 557 ntTSL 4 BASIC13.92□□□□□ -0.18
COL6A3P12111 AC136475.6-201ENST00000533113 289 ntBASIC13.92□□□□□ -0.18
COL6A3P12111 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC13.92□□□□□ -0.18
COL6A3P12111 AC008870.3-201ENST00000566143 641 ntBASIC13.92□□□□□ -0.18
COL6A3P12111 AC109446.3-201ENST00000567344 641 ntTSL 3 BASIC13.92□□□□□ -0.18
COL6A3P12111 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC13.92□□□□□ -0.18
COL6A3P12111 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A3P12111 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A3P12111 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A3P12111 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC13.92□□□□□ -0.18
COL6A3P12111 POLDIP3-209ENST00000617178 2006 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A3P12111 VAMP8-201ENST00000263864 774 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A3P12111 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A3P12111 OR2A14-201ENST00000408899 1012 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
COL6A3P12111 RPL36P20-201ENST00000423702 319 ntBASIC13.92□□□□□ -0.18
COL6A3P12111 AC009237.11-201ENST00000425635 265 ntBASIC13.92□□□□□ -0.18
COL6A3P12111 AC018892.1-201ENST00000451098 265 ntBASIC13.92□□□□□ -0.18
COL6A3P12111 AC090772.2-201ENST00000578443 564 ntTSL 4 BASIC13.92□□□□□ -0.18
COL6A3P12111 GDPD1-205ENST00000581140 1265 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A3P12111 Metazoa_SRP.76-201ENST00000619429 290 ntBASIC13.92□□□□□ -0.18
COL6A3P12111 AC006581.2-201ENST00000631830 455 ntTSL 3 BASIC13.92□□□□□ -0.18
COL6A3P12111 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A3P12111 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A3P12111 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A3P12111 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC13.92□□□□□ -0.18
COL6A3P12111 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A3P12111 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
COL6A3P12111 SYCE1-201ENST00000303903 1011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A3P12111 AC092431.1-201ENST00000415342 420 ntTSL 3 BASIC13.91□□□□□ -0.18
COL6A3P12111 TGIF2P1-201ENST00000435390 685 ntBASIC13.91□□□□□ -0.18
COL6A3P12111 CHIA-207ENST00000451398 1256 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A3P12111 MYL6B-207ENST00000550443 1034 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms