Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
HMGB1P09429 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
HMGB1P09429 C3orf20-202ENST00000412910 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
HMGB1P09429 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
HMGB1P09429 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
HMGB1P09429 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
HMGB1P09429 LINC00265-2P-201ENST00000413372 782 ntBASIC16.59■□□□□ 0.25
HMGB1P09429 DNAJB1P1-201ENST00000429417 1024 ntBASIC16.59■□□□□ 0.25
HMGB1P09429 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC16.59■□□□□ 0.25
HMGB1P09429 AC006335.1-201ENST00000445200 547 ntBASIC16.59■□□□□ 0.25
HMGB1P09429 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC16.59■□□□□ 0.25
HMGB1P09429 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC16.59■□□□□ 0.25
HMGB1P09429 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
HMGB1P09429 AL133467.4-201ENST00000602953 725 ntBASIC16.59■□□□□ 0.25
HMGB1P09429 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC16.59■□□□□ 0.25
HMGB1P09429 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 DKFZP434A062-201ENST00000573103 5021 ntBASIC16.59■□□□□ 0.25
HMGB1P09429 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGB1P09429 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC16.59■□□□□ 0.25
HMGB1P09429 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC16.59■□□□□ 0.25
HMGB1P09429 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
HMGB1P09429 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
HMGB1P09429 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC16.59■□□□□ 0.25
HMGB1P09429 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC16.59■□□□□ 0.25
HMGB1P09429 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
HMGB1P09429 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC16.58■□□□□ 0.25
HMGB1P09429 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC16.58■□□□□ 0.25
HMGB1P09429 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
HMGB1P09429 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC16.58■□□□□ 0.25
HMGB1P09429 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC16.58■□□□□ 0.25
HMGB1P09429 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
HMGB1P09429 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGB1P09429 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGB1P09429 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC16.58■□□□□ 0.25
HMGB1P09429 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
HMGB1P09429 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
HMGB1P09429 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGB1P09429 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
HMGB1P09429 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB1P09429 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB1P09429 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB1P09429 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB1P09429 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB1P09429 AC073869.2-201ENST00000417338 1026 ntBASIC16.58■□□□□ 0.24
HMGB1P09429 FNTAP2-201ENST00000430308 634 ntBASIC16.58■□□□□ 0.24
HMGB1P09429 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB1P09429 RPSAP15-201ENST00000448168 861 ntBASIC16.58■□□□□ 0.24
HMGB1P09429 AC114947.1-202ENST00000514136 344 ntBASIC16.58■□□□□ 0.24
HMGB1P09429 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC16.58■□□□□ 0.24
HMGB1P09429 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC16.58■□□□□ 0.24
HMGB1P09429 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC16.58■□□□□ 0.24
HMGB1P09429 PHBP15-201ENST00000574228 665 ntBASIC16.58■□□□□ 0.24
HMGB1P09429 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC16.58■□□□□ 0.24
HMGB1P09429 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC16.58■□□□□ 0.24
HMGB1P09429 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
HMGB1P09429 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC16.58■□□□□ 0.24
HMGB1P09429 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB1P09429 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB1P09429 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB1P09429 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC16.58■□□□□ 0.24
HMGB1P09429 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB1P09429 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB1P09429 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB1P09429 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC16.58■□□□□ 0.24
HMGB1P09429 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB1P09429 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB1P09429 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
HMGB1P09429 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB1P09429 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB1P09429 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB1P09429 AL031595.1-201ENST00000623969 4709 ntBASIC16.57■□□□□ 0.24
HMGB1P09429 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HMGB1P09429 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGB1P09429 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB1P09429 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGB1P09429 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB1P09429 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB1P09429 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
HMGB1P09429 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC16.57■□□□□ 0.24
HMGB1P09429 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms