Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 RAC2-204ENST00000406508 893 ntTSL 5 BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 AL157407.1-201ENST00000435784 904 ntBASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 BCCIP-202ENST00000299130 2337 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 CATSPERE-203ENST00000366534 3333 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 ADAM32-206ENST00000519315 2168 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 HNRNPH1-216ENST00000510411 2105 ntTSL 5 BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 LINC01019-201ENST00000505443 3199 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 DIDO1-204ENST00000370368 2704 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 DGKZ-216ENST00000528615 2692 ntTSL 5 BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 BDH1-202ENST00000392378 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC28BQ9BUN5 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 TXLNA-201ENST00000373609 5012 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 SNX25-201ENST00000264694 3264 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 AGAP6-202ENST00000412531 2372 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 ILF3-201ENST00000250241 3035 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 ZCCHC12-201ENST00000310164 2231 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 AC009501.1-201ENST00000429952 2069 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 MIR326-201ENST00000362220 95 ntBASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 UGT1A2P-201ENST00000454886 866 ntBASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 COX5BP1-201ENST00000507622 393 ntBASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 AC022217.1-201ENST00000521069 738 ntBASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 AC124068.2-201ENST00000569473 1109 ntBASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 AC106028.4-201ENST00000614509 607 ntBASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 AL136301.1-201ENST00000615830 422 ntBASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 ZNF493-208ENST00000599461 1769 ntBASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 MARK2P16-201ENST00000605714 1723 ntBASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 LINC00567-201ENST00000569854 3409 ntBASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 PLA1A-206ENST00000495992 1695 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 SRSF1-205ENST00000582730 3117 ntTSL 2 BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CCDC28BQ9BUN5 CHD5-201ENST00000262450 9646 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 AC099521.2-201ENST00000619354 2036 ntBASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 TMBIM1-202ENST00000396809 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 CT62-203ENST00000566432 2822 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 GPR107-208ENST00000610997 2813 ntTSL 5 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 AP003969.2-201ENST00000623739 2275 ntBASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 KCNN1-201ENST00000222249 3625 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 CDHR5-202ENST00000358353 3635 ntAPPRIS P4 TSL 5 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 TMC5-204ENST00000541464 3581 ntTSL 2 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 LINC00343-203ENST00000454555 1765 ntTSL 2 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 CDK5RAP1-203ENST00000357886 2164 ntTSL 5 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC28BQ9BUN5 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms