Protein–RNA interactions for Protein: Q96S21

RAB40C, Ras-related protein Rab-40C, humanhuman

Predictions only

Length 281 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40CQ96S21 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC11.5□□□□□ -0.57
RAB40CQ96S21 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC11.5□□□□□ -0.57
RAB40CQ96S21 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC11.5□□□□□ -0.57
RAB40CQ96S21 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC11.5□□□□□ -0.57
RAB40CQ96S21 SIGLEC12-201ENST00000291707 2121 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
RAB40CQ96S21 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
RAB40CQ96S21 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
RAB40CQ96S21 GZF1-202ENST00000377051 4740 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
RAB40CQ96S21 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
RAB40CQ96S21 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 CDK2-201ENST00000266970 2296 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 ICOSLG-203ENST00000400379 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 IL10-202ENST00000423557 1630 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 TXNDC12-201ENST00000371626 2396 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 ITGA5-201ENST00000293379 4444 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 KIAA0513-201ENST00000258180 7404 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 ANXA11-201ENST00000265447 2526 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 NUMA1-233ENST00000616538 6998 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 HINT3-201ENST00000229633 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 RPS27L-201ENST00000330964 6434 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 COL3A1-201ENST00000304636 5543 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 AC087499.6-201ENST00000411576 835 ntBASIC11.49□□□□□ -0.57
RAB40CQ96S21 WDR53-203ENST00000429115 683 ntTSL 2 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 DFFBP1-201ENST00000433250 979 ntBASIC11.49□□□□□ -0.57
RAB40CQ96S21 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 CICP12-201ENST00000455801 843 ntBASIC11.49□□□□□ -0.57
RAB40CQ96S21 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 HNRNPA1P13-201ENST00000510646 963 ntBASIC11.49□□□□□ -0.57
RAB40CQ96S21 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 MIR4745-201ENST00000577608 62 ntBASIC11.49□□□□□ -0.57
RAB40CQ96S21 RN7SL204P-201ENST00000582831 262 ntBASIC11.49□□□□□ -0.57
RAB40CQ96S21 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 STARD8-203ENST00000374599 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 ITPRIP-201ENST00000278071 6807 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 PIK3R5-220ENST00000623421 4318 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 KIF21B-202ENST00000360529 5389 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 MAT2B-204ENST00000518095 3409 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 ABI2-202ENST00000261017 6484 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 CDC14B-201ENST00000375240 2547 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 AJAP1-202ENST00000378191 11666 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 ERBB2-202ENST00000406381 4564 ntTSL 5 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 PARD6B-201ENST00000371610 4615 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 DPAGT1-217ENST00000639704 1719 ntTSL 5 BASIC11.49□□□□□ -0.57
RAB40CQ96S21 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 DAB1-207ENST00000420954 1817 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 ZNF180-201ENST00000221327 4335 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 LINC00869-206ENST00000610578 5734 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
RAB40CQ96S21 CACNB4-210ENST00000539935 8378 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
RAB40CQ96S21 HSPA12A-205ENST00000635765 5841 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
RAB40CQ96S21 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
RAB40CQ96S21 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC11.48□□□□□ -0.57
RAB40CQ96S21 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
RAB40CQ96S21 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
RAB40CQ96S21 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
RAB40CQ96S21 RERE-201ENST00000337907 8026 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
RAB40CQ96S21 NCBP1-202ENST00000375147 5178 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
RAB40CQ96S21 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC11.48□□□□□ -0.57
RAB40CQ96S21 MYO16-205ENST00000457511 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
RAB40CQ96S21 CCDC88C-204ENST00000389857 7474 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms