Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MIR1307-201ENST00000408840 149 ntBASIC13.42□□□□□ -0.26
VPS13AQ96RL7 BX072579.1-201ENST00000449453 344 ntTSL 3 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 RAB6B-205ENST00000486858 880 ntTSL 2 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 RN7SL638P-201ENST00000494527 290 ntBASIC13.42□□□□□ -0.26
VPS13AQ96RL7 RN7SL322P-201ENST00000583519 299 ntBASIC13.42□□□□□ -0.26
VPS13AQ96RL7 POLR2F-213ENST00000606538 760 ntTSL 2 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 PTMAP5-202ENST00000607242 1162 ntBASIC13.42□□□□□ -0.26
VPS13AQ96RL7 HIST1H3E-201ENST00000614911 462 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 AL031587.5-201ENST00000624344 1849 ntBASIC13.42□□□□□ -0.26
VPS13AQ96RL7 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 AL139424.2-202ENST00000641335 1369 ntBASIC13.42□□□□□ -0.26
VPS13AQ96RL7 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 TMUB2-205ENST00000587172 1598 ntTSL 2 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 TSGA10-201ENST00000355053 3037 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 INTS4P1-203ENST00000641008 3683 ntBASIC13.42□□□□□ -0.26
VPS13AQ96RL7 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 FRG1-201ENST00000226798 1074 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 MRPL55-210ENST00000366736 660 ntAPPRIS P1 TSL 3 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 AC096677.3-201ENST00000413162 387 ntBASIC13.42□□□□□ -0.26
VPS13AQ96RL7 JPT1-205ENST00000470924 663 ntTSL 5 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 CD81-209ENST00000492627 886 ntTSL 3 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 MED25-209ENST00000612791 881 ntTSL 5 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 AC026271.1-201ENST00000447794 1348 ntBASIC13.42□□□□□ -0.26
VPS13AQ96RL7 GOSR2-231ENST00000640007 1425 ntTSL 5 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 HPGD-204ENST00000504433 1910 ntTSL 2 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 TXLNGY-202ENST00000407724 1000 ntTSL 3 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 HAX1-211ENST00000532105 771 ntTSL 3 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 AC078925.1-201ENST00000535370 568 ntTSL 2 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 KRTAP2-2-202ENST00000542910 390 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 GABARAPL2-203ENST00000565057 571 ntTSL 2 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 AC006273.1-201ENST00000606966 861 ntBASIC13.42□□□□□ -0.26
VPS13AQ96RL7 AC006511.4-201ENST00000631571 561 ntTSL 3 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 BTN2A2-204ENST00000432533 1570 ntTSL 2 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 SP140L-205ENST00000458341 1727 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 AL359915.1-201ENST00000457719 898 ntTSL 2 BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 GIMD1-201ENST00000507153 654 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 AC091736.1-201ENST00000609370 305 ntBASIC13.41□□□□□ -0.26
VPS13AQ96RL7 AC137723.2-201ENST00000623540 398 ntBASIC13.41□□□□□ -0.26
VPS13AQ96RL7 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 ZNF114-201ENST00000315849 2206 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 LINC01137-201ENST00000424989 1395 ntTSL 2 BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 RTP2-201ENST00000358241 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 DCDC2B-201ENST00000409358 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 NOS2P3-201ENST00000411468 867 ntBASIC13.41□□□□□ -0.26
VPS13AQ96RL7 NOS2P2-201ENST00000426269 867 ntBASIC13.41□□□□□ -0.26
VPS13AQ96RL7 AL162595.1-201ENST00000429227 868 ntTSL 5 BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 AC012100.1-201ENST00000470304 282 ntBASIC13.41□□□□□ -0.26
VPS13AQ96RL7 SPG20-AS1-203ENST00000493739 566 ntTSL 3 BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 ELOBP2-201ENST00000526184 355 ntBASIC13.41□□□□□ -0.26
VPS13AQ96RL7 MIR378I-201ENST00000582688 76 ntBASIC13.41□□□□□ -0.26
VPS13AQ96RL7 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
VPS13AQ96RL7 MRPS16P3-201ENST00000415961 374 ntBASIC13.4□□□□□ -0.26
VPS13AQ96RL7 PRSS45-201ENST00000442359 687 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
VPS13AQ96RL7 DNM1P50-201ENST00000565767 508 ntBASIC13.4□□□□□ -0.26
VPS13AQ96RL7 RN7SL162P-201ENST00000579233 292 ntBASIC13.4□□□□□ -0.26
VPS13AQ96RL7 CYP4F10P-201ENST00000589560 752 ntBASIC13.4□□□□□ -0.26
VPS13AQ96RL7 AL356740.1-201ENST00000602192 1297 ntBASIC13.4□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms