Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 BX322562.1-201ENST00000617004 561 ntBASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 LINC02228-204ENST00000642115 2962 ntBASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 CRYZL1-205ENST00000399442 612 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 PPIL3-205ENST00000409449 756 ntTSL 5 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 AL121994.1-201ENST00000413189 402 ntBASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 CYP4F29P-202ENST00000428301 1279 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 IGKV1OR2-108-201ENST00000453673 353 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 MARK2P17-201ENST00000498560 841 ntBASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 UBE2D3-221ENST00000507845 577 ntTSL 4 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 AL136040.1-201ENST00000557775 601 ntTSL 3 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 RPL26-209ENST00000584164 873 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 AC012617.1-202ENST00000586488 509 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 HCG18-241ENST00000602290 821 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 SMIM4-201ENST00000307106 274 ntTSL 2 BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 SH3BGR-202ENST00000380631 780 ntTSL 5 BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 LINC01824-201ENST00000436082 528 ntTSL 4 BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 CCND3P1-201ENST00000438347 580 ntBASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 AC015818.1-201ENST00000451011 244 ntBASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 RNASEH2CP1-201ENST00000454281 502 ntBASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 DTWD1-205ENST00000558653 1131 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 AC090907.2-201ENST00000559857 720 ntTSL 3 BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 LINC00514-203ENST00000573465 313 ntTSL 5 BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 TRPC5OS-203ENST00000635763 955 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 Metazoa_SRP.210-201ENST00000637921 244 ntBASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 AC138627.1-201ENST00000641127 1257 ntBASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC88AQ3V6T2 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 GOLGA8EP-201ENST00000530246 1959 ntBASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 ZNF570-202ENST00000586475 1985 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 LINC00388-201ENST00000412714 663 ntTSL 5 BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 RPL29P2-202ENST00000498671 657 ntBASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 AC024405.2-201ENST00000528459 810 ntTSL 5 BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 MSRB1-205ENST00000564908 550 ntTSL 3 BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 AC021146.12-201ENST00000608365 477 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 GOLGA8IP-202ENST00000611635 2100 ntBASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 AL136379.1-201ENST00000623471 2642 ntBASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 GOLGA8DP-202ENST00000341390 2184 ntBASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC88AQ3V6T2 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 Metazoa_SRP.173-201ENST00000614020 273 ntBASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms