Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 PEX1-201ENST00000248633 4385 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 CAPN5-201ENST00000278559 4397 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC12.08□□□□□ -0.48
SDCBPO00560 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
SDCBPO00560 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 FAM193A-201ENST00000324666 4846 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 CACNA1G-226ENST00000513689 6879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 CACNA1G-228ENST00000514079 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 CACNA1G-231ENST00000515165 6870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 AC009474.1-201ENST00000455096 1565 ntBASIC12.08□□□□□ -0.48
SDCBPO00560 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
SDCBPO00560 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
SDCBPO00560 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
SDCBPO00560 PCDHGA5-201ENST00000518069 4602 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 LANCL1-205ENST00000443314 4781 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
SDCBPO00560 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 PAX8-203ENST00000348715 3966 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC12.08□□□□□ -0.48
SDCBPO00560 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC12.08□□□□□ -0.48
SDCBPO00560 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 IFT81-202ENST00000361948 3048 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
SDCBPO00560 C1S-202ENST00000360817 2635 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC12.07□□□□□ -0.48
SDCBPO00560 SIRPA-203ENST00000400068 4201 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC12.07□□□□□ -0.48
SDCBPO00560 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
SDCBPO00560 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC12.07□□□□□ -0.48
SDCBPO00560 AC118758.2-201ENST00000614242 2813 ntBASIC12.07□□□□□ -0.48
SDCBPO00560 AC239809.3-201ENST00000599640 4266 ntTSL 5 BASIC12.07□□□□□ -0.48
SDCBPO00560 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 AL358334.2-201ENST00000553648 4714 ntTSL 2 BASIC12.07□□□□□ -0.48
SDCBPO00560 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 TSPAN31-201ENST00000257910 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
SDCBPO00560 MON1B-201ENST00000248248 6091 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC12.07□□□□□ -0.48
SDCBPO00560 ANKRD36-204ENST00000461153 6102 ntAPPRIS P2 TSL 5 BASIC12.07□□□□□ -0.48
SDCBPO00560 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 BDH1-202ENST00000392378 3455 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 RPGRIP1-202ENST00000400017 3940 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
SDCBPO00560 CCNY-203ENST00000374704 3960 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
SDCBPO00560 HIST1H2BPS3-201ENST00000419683 341 ntBASIC12.07□□□□□ -0.48
SDCBPO00560 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC12.07□□□□□ -0.48
SDCBPO00560 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC12.07□□□□□ -0.48
SDCBPO00560 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC12.07□□□□□ -0.48
SDCBPO00560 AL355994.2-201ENST00000447882 704 ntBASIC12.07□□□□□ -0.48
SDCBPO00560 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 COX20P2-201ENST00000452636 358 ntBASIC12.07□□□□□ -0.48
SDCBPO00560 FAM224B-201ENST00000458667 2032 ntTSL 2 BASIC12.07□□□□□ -0.48
SDCBPO00560 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
SDCBPO00560 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC12.07□□□□□ -0.48
SDCBPO00560 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC12.07□□□□□ -0.48
SDCBPO00560 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC12.07□□□□□ -0.48
SDCBPO00560 NEK4-207ENST00000535191 2452 ntTSL 2 BASIC12.07□□□□□ -0.48
SDCBPO00560 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC12.07□□□□□ -0.48
SDCBPO00560 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC12.07□□□□□ -0.48
SDCBPO00560 AC005225.4-201ENST00000557330 545 ntBASIC12.07□□□□□ -0.48
SDCBPO00560 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
SDCBPO00560 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC12.07□□□□□ -0.48
SDCBPO00560 PPY2P-201ENST00000582808 702 ntBASIC12.07□□□□□ -0.48
SDCBPO00560 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC12.07□□□□□ -0.48
SDCBPO00560 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC12.07□□□□□ -0.48
SDCBPO00560 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC12.07□□□□□ -0.48
SDCBPO00560 AC008825.2-201ENST00000603374 718 ntBASIC12.07□□□□□ -0.48
SDCBPO00560 AC027601.3-201ENST00000622907 509 ntBASIC12.07□□□□□ -0.48
SDCBPO00560 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
SDCBPO00560 POLG-202ENST00000442287 4487 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 SCAF4-201ENST00000286835 4193 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 ZCCHC8-207ENST00000543897 5663 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 SON-203ENST00000381679 7860 ntTSL 5 BASIC12.07□□□□□ -0.48
SDCBPO00560 PLAT-203ENST00000429089 2599 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
SDCBPO00560 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 ZNF426-204ENST00000593003 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
SDCBPO00560 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms