Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
SNED1Q8TER0 HORMAD1-202ENST00000361824 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SNED1Q8TER0 TUBB4AP1-201ENST00000450755 1325 ntBASIC16.72■□□□□ 0.27
SNED1Q8TER0 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SNED1Q8TER0 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SNED1Q8TER0 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SNED1Q8TER0 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SNED1Q8TER0 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SNED1Q8TER0 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
SNED1Q8TER0 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
SNED1Q8TER0 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SNED1Q8TER0 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
SNED1Q8TER0 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
SNED1Q8TER0 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
SNED1Q8TER0 RSPH4A-202ENST00000368580 1410 ntTSL 5 BASIC16.72■□□□□ 0.27
SNED1Q8TER0 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC16.71■□□□□ 0.27
SNED1Q8TER0 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC16.71■□□□□ 0.27
SNED1Q8TER0 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SNED1Q8TER0 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC16.71■□□□□ 0.27
SNED1Q8TER0 MED15P3-201ENST00000413613 326 ntBASIC16.71■□□□□ 0.27
SNED1Q8TER0 PLA2G1B-202ENST00000423423 423 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SNED1Q8TER0 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC16.71■□□□□ 0.27
SNED1Q8TER0 AC023051.2-201ENST00000541141 460 ntBASIC16.71■□□□□ 0.27
SNED1Q8TER0 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
SNED1Q8TER0 AC009065.4-201ENST00000563734 543 ntTSL 3 BASIC16.71■□□□□ 0.27
SNED1Q8TER0 AC003070.1-201ENST00000592389 457 ntTSL 2 BASIC16.71■□□□□ 0.27
SNED1Q8TER0 SNX20-205ENST00000610485 557 ntTSL 5 BASIC16.71■□□□□ 0.27
SNED1Q8TER0 BX322562.1-201ENST00000617004 561 ntBASIC16.71■□□□□ 0.27
SNED1Q8TER0 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC16.71■□□□□ 0.27
SNED1Q8TER0 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SNED1Q8TER0 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
SNED1Q8TER0 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SNED1Q8TER0 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
SNED1Q8TER0 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SNED1Q8TER0 OS9-207ENST00000439210 1946 ntTSL 2 BASIC16.71■□□□□ 0.27
SNED1Q8TER0 LINC00967-203ENST00000518035 1502 ntTSL 2 BASIC16.71■□□□□ 0.27
SNED1Q8TER0 FGF21-202ENST00000593756 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SNED1Q8TER0 AL008638.4-201ENST00000624792 1315 ntBASIC16.71■□□□□ 0.27
SNED1Q8TER0 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SNED1Q8TER0 RAPGEFL1-202ENST00000456989 1582 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SNED1Q8TER0 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SNED1Q8TER0 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SNED1Q8TER0 FMO6P-201ENST00000236166 1620 ntBASIC16.71■□□□□ 0.27
SNED1Q8TER0 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SNED1Q8TER0 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SNED1Q8TER0 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
SNED1Q8TER0 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SNED1Q8TER0 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC16.71■□□□□ 0.27
SNED1Q8TER0 AC007686.3-201ENST00000619017 3487 ntBASIC16.71■□□□□ 0.26
SNED1Q8TER0 KRT8P25-201ENST00000473150 1456 ntBASIC16.71■□□□□ 0.26
SNED1Q8TER0 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC16.71■□□□□ 0.26
SNED1Q8TER0 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNED1Q8TER0 OR2W3-201ENST00000360358 945 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 MUC1-207ENST00000368392 1032 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SNED1Q8TER0 MUC1-208ENST00000368393 937 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SNED1Q8TER0 TPT1P9-201ENST00000413759 514 ntBASIC16.7■□□□□ 0.26
SNED1Q8TER0 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 MUC1-213ENST00000462215 1189 ntTSL 2 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 OR52V1P-201ENST00000515557 898 ntBASIC16.7■□□□□ 0.26
SNED1Q8TER0 RN7SL440P-201ENST00000577855 343 ntBASIC16.7■□□□□ 0.26
SNED1Q8TER0 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 ECSIT-211ENST00000592312 1286 ntTSL 5 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNED1Q8TER0 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNED1Q8TER0 LINC01658-201ENST00000320372 1578 ntTSL 2 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNED1Q8TER0 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNED1Q8TER0 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SNED1Q8TER0 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNED1Q8TER0 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNED1Q8TER0 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNED1Q8TER0 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNED1Q8TER0 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNED1Q8TER0 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 CROCCP1-201ENST00000426910 5675 ntBASIC16.7■□□□□ 0.26
SNED1Q8TER0 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNED1Q8TER0 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SNED1Q8TER0 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNED1Q8TER0 S100B-201ENST00000291700 877 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNED1Q8TER0 RNF181-201ENST00000306368 569 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNED1Q8TER0 LINC02026-202ENST00000414309 772 ntTSL 3 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 KCNMA1-AS1-201ENST00000426234 863 ntTSL 5 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 HLA-W-207ENST00000439514 771 ntBASIC16.7■□□□□ 0.26
SNED1Q8TER0 RNF181-203ENST00000441634 844 ntAPPRIS ALT1 TSL 2 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNED1Q8TER0 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 AP003043.1-201ENST00000527804 547 ntTSL 4 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 AC073896.3-201ENST00000546789 437 ntTSL 5 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 CYB5D2-202ENST00000573984 495 ntTSL 4 BASIC16.7■□□□□ 0.26
SNED1Q8TER0 MIR3940-201ENST00000579148 102 ntBASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms