Protein–RNA interactions for Protein: Q8IVU3

HERC6, Probable E3 ubiquitin-protein ligase HERC6, humanhuman

Predictions only

Length 1,022 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERC6Q8IVU3 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
HERC6Q8IVU3 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
HERC6Q8IVU3 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.22■□□□□ 0.03
HERC6Q8IVU3 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HERC6Q8IVU3 UCKL1-AS1-201ENST00000623569 3602 ntBASIC15.22■□□□□ 0.03
HERC6Q8IVU3 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 AC138761.6-201ENST00000583997 1423 ntBASIC15.21■□□□□ 0.03
HERC6Q8IVU3 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 AC106827.1-201ENST00000366454 431 ntBASIC15.21■□□□□ 0.03
HERC6Q8IVU3 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 AC092903.1-201ENST00000466506 262 ntBASIC15.21■□□□□ 0.03
HERC6Q8IVU3 RN7SL128P-201ENST00000467883 305 ntBASIC15.21■□□□□ 0.03
HERC6Q8IVU3 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 AC093300.1-201ENST00000510368 1201 ntBASIC15.21■□□□□ 0.03
HERC6Q8IVU3 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 AC087203.1-201ENST00000532111 1181 ntBASIC15.21■□□□□ 0.03
HERC6Q8IVU3 RN7SL556P-201ENST00000582856 298 ntBASIC15.21■□□□□ 0.03
HERC6Q8IVU3 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 AC104506.1-201ENST00000609247 429 ntBASIC15.21■□□□□ 0.03
HERC6Q8IVU3 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC15.21■□□□□ 0.03
HERC6Q8IVU3 RARS-210ENST00000626454 177 ntTSL 5 BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
HERC6Q8IVU3 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
HERC6Q8IVU3 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
HERC6Q8IVU3 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
HERC6Q8IVU3 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15.21■□□□□ 0.02
HERC6Q8IVU3 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
HERC6Q8IVU3 AC005912.2-201ENST00000619492 2400 ntBASIC15.21■□□□□ 0.02
HERC6Q8IVU3 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 AC104961.1-201ENST00000427605 771 ntBASIC15.2■□□□□ 0.02
HERC6Q8IVU3 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 NRADDP-201ENST00000437305 691 ntBASIC15.2■□□□□ 0.02
HERC6Q8IVU3 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 AC092612.1-201ENST00000514501 998 ntBASIC15.2■□□□□ 0.02
HERC6Q8IVU3 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 AL590235.1-201ENST00000564650 861 ntBASIC15.2■□□□□ 0.02
HERC6Q8IVU3 HNRNPA1P16-201ENST00000575692 955 ntBASIC15.2■□□□□ 0.02
HERC6Q8IVU3 RN7SL455P-201ENST00000580629 282 ntBASIC15.2■□□□□ 0.02
HERC6Q8IVU3 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC15.2■□□□□ 0.02
HERC6Q8IVU3 AC073869.4-201ENST00000620841 800 ntBASIC15.2■□□□□ 0.02
HERC6Q8IVU3 AC005274.1-201ENST00000623460 802 ntBASIC15.2■□□□□ 0.02
HERC6Q8IVU3 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 MPI-203ENST00000535694 1523 ntTSL 2 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HERC6Q8IVU3 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms