Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 AC140113.3-201ENST00000605663 199 ntBASIC8.67□□□□□ -1.02
LINC00643Q86TS7 AP003355.2-201ENST00000605923 2622 ntBASIC8.67□□□□□ -1.02
LINC00643Q86TS7 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 FBN2-201ENST00000262464 10724 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 VPS33A-201ENST00000267199 4586 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 KIF26B-201ENST00000366518 12113 ntTSL 5 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 TMED7-201ENST00000456936 3757 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 DOCK10-201ENST00000258390 7260 ntAPPRIS P3 TSL 5 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 PIP5K1A-203ENST00000368890 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 LRTM2-202ENST00000535041 3236 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 UBE2L3-201ENST00000342192 3028 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 RAB7B-202ENST00000617991 3014 ntAPPRIS P1 TSL 2 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 INSC-201ENST00000379554 2954 ntAPPRIS P4 TSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 LDLR-205ENST00000557933 2941 ntAPPRIS ALT2 TSL 5 BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 LINC01254-201ENST00000566225 2908 ntBASIC8.67□□□□□ -1.02
LINC00643Q86TS7 PTGIS-201ENST00000244043 5579 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 VPS16-202ENST00000380445 2750 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
LINC00643Q86TS7 CTBP1-AS2-202ENST00000505364 2423 ntTSL 2 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 AL117378.1-201ENST00000454596 2305 ntTSL 2 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 SAP18-208ENST00000621421 2300 ntAPPRIS P2 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 IRF5-208ENST00000473745 2282 ntAPPRIS P1 TSL 5 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 CNGB1-204ENST00000564448 4364 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 PLXNA4-202ENST00000359827 13786 ntAPPRIS P1 TSL 5 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 PECR-201ENST00000265322 1853 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 FOSB-210ENST00000591858 3658 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 AP5S1-205ENST00000615891 5362 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 PROS1-202ENST00000394236 3560 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 XYLT2-201ENST00000017003 3507 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 TNFSF10-202ENST00000420541 1619 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 NAT10-202ENST00000527971 1600 ntTSL 2 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 AP000897.1-201ENST00000584036 1613 ntBASIC8.66□□□□□ -1.02
LINC00643Q86TS7 LAMA4-219ENST00000522006 6438 ntAPPRIS P3 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 PIGG-217ENST00000509768 3121 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 IDS-201ENST00000340855 7619 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 MCM7-201ENST00000303887 2957 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 AC138028.6-201ENST00000616106 1482 ntBASIC8.66□□□□□ -1.02
LINC00643Q86TS7 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 EXD2-206ENST00000409949 2688 ntTSL 2 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 IGHMBP2-201ENST00000255078 3961 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 EHMT2-203ENST00000375537 3965 ntAPPRIS P4 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 SNORA50C-201ENST00000408535 133 ntBASIC8.66□□□□□ -1.02
LINC00643Q86TS7 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 ZSCAN2-207ENST00000448803 3813 ntAPPRIS P2 TSL 5 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 NME4-207ENST00000450036 985 ntTSL 3 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 AC006970.2-201ENST00000450065 779 ntBASIC8.66□□□□□ -1.02
LINC00643Q86TS7 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 ARTN-206ENST00000472435 402 ntTSL 3 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 NME3-204ENST00000563498 920 ntTSL 2 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 SPIB-207ENST00000597855 564 ntTSL 4 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 SNORA50.1-201ENST00000628590 135 ntBASIC8.66□□□□□ -1.02
LINC00643Q86TS7 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 NRF1-201ENST00000223190 2424 ntAPPRIS P1 TSL 5 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 RPS6KA2-211ENST00000510118 5992 ntTSL 2 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 SLC45A4-201ENST00000024061 3546 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 BANK1-201ENST00000322953 3372 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 VAX1-201ENST00000277905 4494 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 CFAP52-201ENST00000352665 2193 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms