Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 ACTBP8-201ENST00000403258 1108 ntBASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 AC134915.1-201ENST00000426461 574 ntBASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 COX5BP1-201ENST00000507622 393 ntBASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 AC124283.3-201ENST00000570869 594 ntBASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 AP001527.2-201ENST00000614441 631 ntBASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 AP005019.2-201ENST00000615104 511 ntBASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 KCNJ5-202ENST00000529694 5940 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 ARAP1-204ENST00000393609 5145 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 RRBP1-201ENST00000246043 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 PRKCE-201ENST00000306156 5650 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 AC015688.4-201ENST00000580780 1647 ntBASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
PDLIM3Q53GG5 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 MAOA-204ENST00000542639 5438 ntTSL 2 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 GLI3-201ENST00000395925 8208 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 KIF21B-202ENST00000360529 5389 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 LANCL1-205ENST00000443314 4781 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 SETD1B-204ENST00000619791 5901 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 AC139712.1-201ENST00000378256 1875 ntBASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 KHSRPP1-201ENST00000427983 1768 ntBASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 BRD1-201ENST00000216267 4614 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 GALC-206ENST00000544807 2528 ntTSL 2 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 BDNF-208ENST00000418212 4125 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 BRWD1-204ENST00000380800 7605 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 C1QBPP1-201ENST00000400117 770 ntBASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 CNN2P8-201ENST00000421872 913 ntBASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 ALG3P1-201ENST00000508806 1114 ntBASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 IFT20-206ENST00000578122 834 ntTSL 2 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 IFT20-208ENST00000578985 831 ntTSL 3 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 NKG7-204ENST00000595217 816 ntTSL 2 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 AL451050.2-201ENST00000606967 682 ntBASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 BX088702.1-201ENST00000610784 235 ntBASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 AC011491.1-203ENST00000637688 543 ntBASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 FAM157A-203ENST00000634862 6083 ntTSL 5 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 TPR-201ENST00000367478 9708 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 RAPGEF4-AS1-202ENST00000435328 4625 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 CETP-203ENST00000566128 1733 ntTSL 5 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms