Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
H3F3AP84243 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
H3F3AP84243 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC12.62□□□□□ -0.39
H3F3AP84243 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
H3F3AP84243 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC12.62□□□□□ -0.39
H3F3AP84243 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC12.62□□□□□ -0.39
H3F3AP84243 FAM90A2P-201ENST00000511144 1395 ntBASIC12.62□□□□□ -0.39
H3F3AP84243 FAM90A25P-201ENST00000528404 1395 ntBASIC12.62□□□□□ -0.39
H3F3AP84243 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC12.62□□□□□ -0.39
H3F3AP84243 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC12.62□□□□□ -0.39
H3F3AP84243 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC12.62□□□□□ -0.39
H3F3AP84243 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC12.62□□□□□ -0.39
H3F3AP84243 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC12.62□□□□□ -0.39
H3F3AP84243 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC12.62□□□□□ -0.39
H3F3AP84243 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC12.62□□□□□ -0.39
H3F3AP84243 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC12.62□□□□□ -0.39
H3F3AP84243 CU633904.3-201ENST00000624042 1029 ntBASIC12.62□□□□□ -0.39
H3F3AP84243 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC12.62□□□□□ -0.39
H3F3AP84243 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
H3F3AP84243 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC12.62□□□□□ -0.39
H3F3AP84243 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC12.62□□□□□ -0.39
H3F3AP84243 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC12.62□□□□□ -0.39
H3F3AP84243 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
H3F3AP84243 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC12.61□□□□□ -0.39
H3F3AP84243 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC12.61□□□□□ -0.39
H3F3AP84243 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC12.61□□□□□ -0.39
H3F3AP84243 AC072061.1-201ENST00000569710 2234 ntBASIC12.61□□□□□ -0.39
H3F3AP84243 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
H3F3AP84243 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 MIR557-201ENST00000385239 98 ntBASIC12.61□□□□□ -0.39
H3F3AP84243 MIR645-201ENST00000385283 94 ntBASIC12.61□□□□□ -0.39
H3F3AP84243 AL662890.1-201ENST00000396818 632 ntBASIC12.61□□□□□ -0.39
H3F3AP84243 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 AC073869.2-201ENST00000417338 1026 ntBASIC12.61□□□□□ -0.39
H3F3AP84243 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC12.61□□□□□ -0.39
H3F3AP84243 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC12.61□□□□□ -0.39
H3F3AP84243 AL133466.1-201ENST00000447582 150 ntBASIC12.61□□□□□ -0.39
H3F3AP84243 DUTP3-201ENST00000450025 415 ntBASIC12.61□□□□□ -0.39
H3F3AP84243 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC12.61□□□□□ -0.39
H3F3AP84243 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC12.61□□□□□ -0.39
H3F3AP84243 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC12.61□□□□□ -0.39
H3F3AP84243 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
H3F3AP84243 CHMP4BP1-201ENST00000556017 588 ntBASIC12.61□□□□□ -0.39
H3F3AP84243 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC12.61□□□□□ -0.39
H3F3AP84243 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC12.61□□□□□ -0.39
H3F3AP84243 CENPX-208ENST00000584347 799 ntTSL 2 BASIC12.61□□□□□ -0.39
H3F3AP84243 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC12.61□□□□□ -0.39
H3F3AP84243 AL133467.4-201ENST00000602953 725 ntBASIC12.61□□□□□ -0.39
H3F3AP84243 AL021707.6-201ENST00000609212 491 ntBASIC12.61□□□□□ -0.39
H3F3AP84243 AC009560.1-201ENST00000620208 434 ntBASIC12.61□□□□□ -0.39
H3F3AP84243 AC091812.3-201ENST00000621362 345 ntBASIC12.61□□□□□ -0.39
H3F3AP84243 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC12.61□□□□□ -0.39
H3F3AP84243 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC12.61□□□□□ -0.39
H3F3AP84243 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC12.61□□□□□ -0.39
H3F3AP84243 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
H3F3AP84243 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
H3F3AP84243 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms