Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 SPDYE12P-201ENST00000618416 771 ntBASIC10.97□□□□□ -0.65
CXCL1P09341 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC10.97□□□□□ -0.65
CXCL1P09341 ARHGAP33-203ENST00000314737 3858 ntAPPRIS P3 TSL 2 BASIC10.97□□□□□ -0.65
CXCL1P09341 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC10.97□□□□□ -0.65
CXCL1P09341 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 DRD5P1-201ENST00000456605 1438 ntBASIC10.97□□□□□ -0.65
CXCL1P09341 GPHN-203ENST00000478722 4297 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 PDIA3P1-201ENST00000471856 1510 ntBASIC10.97□□□□□ -0.65
CXCL1P09341 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC10.97□□□□□ -0.65
CXCL1P09341 HTR2C-201ENST00000276198 4751 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 SCOC-210ENST00000608372 5129 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 TMPRSS13-205ENST00000526090 2592 ntTSL 2 BASIC10.97□□□□□ -0.65
CXCL1P09341 BTBD9-206ENST00000481247 8525 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
CXCL1P09341 LEPR-201ENST00000344610 2935 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 RAB6A-202ENST00000336083 3085 ntAPPRIS ALT1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 RNF220-202ENST00000355387 3099 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 TMCC2-208ENST00000545499 3339 ntAPPRIS ALT2 TSL 2 BASIC10.97□□□□□ -0.65
CXCL1P09341 DZIP1L-201ENST00000327532 3493 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 SMG9-201ENST00000270066 5510 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 NIN-206ENST00000453196 6785 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
CXCL1P09341 TLR6-202ENST00000436693 5880 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 MAGEL2-201ENST00000532292 4298 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
CXCL1P09341 PAM-204ENST00000348126 3622 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 DCAF6-203ENST00000367843 3302 ntAPPRIS P3 TSL 5 BASIC10.96□□□□□ -0.65
CXCL1P09341 PLD5-204ENST00000442594 3305 ntAPPRIS P3 TSL 5 BASIC10.96□□□□□ -0.65
CXCL1P09341 TBC1D29-202ENST00000580161 3018 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 ACADL-201ENST00000233710 2543 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 LAS1L-202ENST00000374807 2386 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 NBPF17P-201ENST00000401087 2119 ntBASIC10.96□□□□□ -0.65
CXCL1P09341 HPSE2-201ENST00000370546 1849 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC10.96□□□□□ -0.65
CXCL1P09341 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 DPYSL5-201ENST00000288699 5209 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 RAP1A-202ENST00000369709 5024 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.65
CXCL1P09341 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 CCT7P1-201ENST00000406551 1611 ntBASIC10.96□□□□□ -0.65
CXCL1P09341 NUSAP1-208ENST00000559596 1629 ntAPPRIS P4 TSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 PCDHGA5-201ENST00000518069 4602 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC10.96□□□□□ -0.65
CXCL1P09341 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 AC087499.5-201ENST00000452760 1342 ntBASIC10.96□□□□□ -0.65
CXCL1P09341 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC10.96□□□□□ -0.65
CXCL1P09341 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
CXCL1P09341 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
CXCL1P09341 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC10.96□□□□□ -0.65
CXCL1P09341 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC10.96□□□□□ -0.65
CXCL1P09341 AC007969.1-201ENST00000433675 447 ntBASIC10.96□□□□□ -0.65
CXCL1P09341 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC10.96□□□□□ -0.65
CXCL1P09341 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC10.96□□□□□ -0.65
CXCL1P09341 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC10.96□□□□□ -0.65
CXCL1P09341 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC10.96□□□□□ -0.65
CXCL1P09341 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC10.96□□□□□ -0.65
CXCL1P09341 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC10.96□□□□□ -0.65
CXCL1P09341 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC10.96□□□□□ -0.65
CXCL1P09341 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
CXCL1P09341 AC093813.1-201ENST00000605066 256 ntBASIC10.96□□□□□ -0.65
CXCL1P09341 AC107373.2-201ENST00000607735 490 ntBASIC10.96□□□□□ -0.65
CXCL1P09341 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC10.96□□□□□ -0.65
CXCL1P09341 AC073592.8-201ENST00000624126 511 ntBASIC10.96□□□□□ -0.65
CXCL1P09341 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC10.96□□□□□ -0.65
CXCL1P09341 RETREG3-201ENST00000309428 3759 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CXCL1P09341 AC135050.1-201ENST00000622229 3380 ntTSL 2 BASIC10.96□□□□□ -0.66
CXCL1P09341 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.66
CXCL1P09341 PRKCQ-203ENST00000539722 3224 ntTSL 2 BASIC10.96□□□□□ -0.66
CXCL1P09341 OR2V2-202ENST00000641492 4777 ntAPPRIS P1 BASIC10.96□□□□□ -0.66
CXCL1P09341 OTOA-203ENST00000388957 2703 ntAPPRIS ALT2 TSL 2 BASIC10.96□□□□□ -0.66
CXCL1P09341 EIF2AK1-201ENST00000199389 4469 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
CXCL1P09341 ATP13A2-203ENST00000452699 3981 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.66
CXCL1P09341 TBC1D22A-203ENST00000380995 3934 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
CXCL1P09341 ELMOD3-202ENST00000393852 2332 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
CXCL1P09341 VANGL1-201ENST00000310260 2265 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.66
CXCL1P09341 POLR3E-219ENST00000615879 3655 ntTSL 2 BASIC10.96□□□□□ -0.66
CXCL1P09341 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
CXCL1P09341 OSBPL7-202ENST00000392507 3349 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
CXCL1P09341 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC10.96□□□□□ -0.66
CXCL1P09341 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
CXCL1P09341 AC006033.2-201ENST00000609522 1968 ntTSL 2 BASIC10.96□□□□□ -0.66
CXCL1P09341 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC10.96□□□□□ -0.66
CXCL1P09341 TRIM60-201ENST00000341062 1867 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
CXCL1P09341 DYRK4-201ENST00000010132 1840 ntAPPRIS P2 TSL 5 BASIC10.95□□□□□ -0.66
CXCL1P09341 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC10.95□□□□□ -0.66
CXCL1P09341 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC10.95□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms