Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RAE1P78406 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RAE1P78406 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC13.37□□□□□ -0.27
RAE1P78406 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
RAE1P78406 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC13.37□□□□□ -0.27
RAE1P78406 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC13.36□□□□□ -0.27
RAE1P78406 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC13.36□□□□□ -0.27
RAE1P78406 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 KRT8P43-201ENST00000406052 1458 ntBASIC13.36□□□□□ -0.27
RAE1P78406 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 NTN4-203ENST00000538383 1971 ntTSL 2 BASIC13.36□□□□□ -0.27
RAE1P78406 ALG11-204ENST00000616513 1983 ntTSL 2 BASIC13.36□□□□□ -0.27
RAE1P78406 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
RAE1P78406 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC13.36□□□□□ -0.27
RAE1P78406 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 PTENP1-202ENST00000532280 3996 ntBASIC13.36□□□□□ -0.27
RAE1P78406 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC13.36□□□□□ -0.27
RAE1P78406 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
RAE1P78406 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC13.36□□□□□ -0.27
RAE1P78406 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 STX3-207ENST00000633708 3111 ntTSL 5 BASIC13.36□□□□□ -0.27
RAE1P78406 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 AC015909.3-201ENST00000572855 1794 ntBASIC13.36□□□□□ -0.27
RAE1P78406 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC13.36□□□□□ -0.27
RAE1P78406 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 CRCP-204ENST00000398684 492 ntTSL 2 BASIC13.36□□□□□ -0.27
RAE1P78406 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC13.36□□□□□ -0.27
RAE1P78406 AC006987.1-201ENST00000413610 527 ntBASIC13.36□□□□□ -0.27
RAE1P78406 BX679664.3-201ENST00000414070 555 ntBASIC13.36□□□□□ -0.27
RAE1P78406 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC13.36□□□□□ -0.27
RAE1P78406 AC016700.1-201ENST00000429424 312 ntBASIC13.36□□□□□ -0.27
RAE1P78406 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC13.36□□□□□ -0.27
RAE1P78406 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC13.36□□□□□ -0.27
RAE1P78406 PFN1P12-201ENST00000455938 534 ntBASIC13.36□□□□□ -0.27
RAE1P78406 AC113935.1-201ENST00000471722 555 ntBASIC13.36□□□□□ -0.27
RAE1P78406 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC13.36□□□□□ -0.27
RAE1P78406 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC13.36□□□□□ -0.27
RAE1P78406 ALG1L13P-202ENST00000519320 584 ntBASIC13.36□□□□□ -0.27
RAE1P78406 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
RAE1P78406 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC13.36□□□□□ -0.27
RAE1P78406 AL359881.2-201ENST00000602973 570 ntBASIC13.36□□□□□ -0.27
RAE1P78406 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
RAE1P78406 NPTN-201ENST00000345330 2444 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
RAE1P78406 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
RAE1P78406 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC13.36□□□□□ -0.27
RAE1P78406 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
RAE1P78406 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC13.36□□□□□ -0.27
RAE1P78406 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC13.36□□□□□ -0.27
RAE1P78406 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
RAE1P78406 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 MSNP1-201ENST00000511640 1732 ntBASIC13.36□□□□□ -0.27
RAE1P78406 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
RAE1P78406 SARS-201ENST00000234677 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RAE1P78406 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RAE1P78406 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
RAE1P78406 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RAE1P78406 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RAE1P78406 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
RAE1P78406 ZNF493-208ENST00000599461 1769 ntBASIC13.35□□□□□ -0.27
RAE1P78406 PGM1-202ENST00000371084 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RAE1P78406 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
RAE1P78406 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
RAE1P78406 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RAE1P78406 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RAE1P78406 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
RAE1P78406 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RAE1P78406 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC13.35□□□□□ -0.27
RAE1P78406 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
RAE1P78406 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RAE1P78406 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RAE1P78406 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RAE1P78406 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
RAE1P78406 AC016730.1-201ENST00000420828 832 ntTSL 2 BASIC13.35□□□□□ -0.27
RAE1P78406 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC13.35□□□□□ -0.27
RAE1P78406 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms