Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
RHBDL3P58872 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RHBDL3P58872 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
RHBDL3P58872 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC16.42■□□□□ 0.22
RHBDL3P58872 AL512599.1-201ENST00000430724 685 ntBASIC16.42■□□□□ 0.22
RHBDL3P58872 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC16.42■□□□□ 0.22
RHBDL3P58872 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RHBDL3P58872 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RHBDL3P58872 RN7SL351P-201ENST00000469306 248 ntBASIC16.42■□□□□ 0.22
RHBDL3P58872 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC16.42■□□□□ 0.22
RHBDL3P58872 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC16.42■□□□□ 0.22
RHBDL3P58872 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RHBDL3P58872 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC16.42■□□□□ 0.22
RHBDL3P58872 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RHBDL3P58872 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC16.42■□□□□ 0.22
RHBDL3P58872 AL118516.1-201ENST00000564152 670 ntBASIC16.42■□□□□ 0.22
RHBDL3P58872 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC16.42■□□□□ 0.22
RHBDL3P58872 PEBP1P2-201ENST00000603980 558 ntBASIC16.42■□□□□ 0.22
RHBDL3P58872 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC16.42■□□□□ 0.22
RHBDL3P58872 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC16.42■□□□□ 0.22
RHBDL3P58872 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RHBDL3P58872 ESR1-214ENST00000638569 132 ntTSL 5 BASIC16.42■□□□□ 0.22
RHBDL3P58872 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RHBDL3P58872 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RHBDL3P58872 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC16.42■□□□□ 0.22
RHBDL3P58872 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
RHBDL3P58872 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
RHBDL3P58872 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RHBDL3P58872 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RHBDL3P58872 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
RHBDL3P58872 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RHBDL3P58872 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RHBDL3P58872 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC16.42■□□□□ 0.22
RHBDL3P58872 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RHBDL3P58872 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
RHBDL3P58872 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 AGAP10P-201ENST00000454844 2418 ntBASIC16.41■□□□□ 0.22
RHBDL3P58872 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC16.41■□□□□ 0.22
RHBDL3P58872 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
RHBDL3P58872 FKBP4P8-201ENST00000610931 1369 ntBASIC16.41■□□□□ 0.22
RHBDL3P58872 AC111170.3-201ENST00000624282 2464 ntBASIC16.41■□□□□ 0.22
RHBDL3P58872 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC16.41■□□□□ 0.22
RHBDL3P58872 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
RHBDL3P58872 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
RHBDL3P58872 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC16.41■□□□□ 0.22
RHBDL3P58872 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC16.41■□□□□ 0.22
RHBDL3P58872 OR10N1P-201ENST00000392758 869 ntBASIC16.41■□□□□ 0.22
RHBDL3P58872 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC16.41■□□□□ 0.22
RHBDL3P58872 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
RHBDL3P58872 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC16.41■□□□□ 0.22
RHBDL3P58872 AC006548.2-201ENST00000605217 529 ntBASIC16.41■□□□□ 0.22
RHBDL3P58872 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC16.41■□□□□ 0.22
RHBDL3P58872 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC16.41■□□□□ 0.22
RHBDL3P58872 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC16.41■□□□□ 0.22
RHBDL3P58872 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.41■□□□□ 0.22
RHBDL3P58872 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC16.41■□□□□ 0.22
RHBDL3P58872 AC245140.2-201ENST00000624054 1939 ntBASIC16.41■□□□□ 0.22
RHBDL3P58872 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RHBDL3P58872 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
RHBDL3P58872 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC16.4■□□□□ 0.22
RHBDL3P58872 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC16.4■□□□□ 0.22
RHBDL3P58872 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC16.4■□□□□ 0.22
RHBDL3P58872 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RHBDL3P58872 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC16.4■□□□□ 0.22
RHBDL3P58872 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
RHBDL3P58872 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RHBDL3P58872 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RHBDL3P58872 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RHBDL3P58872 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC16.4■□□□□ 0.22
RHBDL3P58872 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
RHBDL3P58872 RPL10L-201ENST00000298283 812 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
RHBDL3P58872 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC16.4■□□□□ 0.22
RHBDL3P58872 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC16.4■□□□□ 0.22
RHBDL3P58872 OR51A9P-201ENST00000422578 911 ntBASIC16.4■□□□□ 0.22
RHBDL3P58872 IDS-203ENST00000428056 1213 ntTSL 2 BASIC16.4■□□□□ 0.22
RHBDL3P58872 AC092810.2-201ENST00000431570 362 ntBASIC16.4■□□□□ 0.22
RHBDL3P58872 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC16.4■□□□□ 0.22
RHBDL3P58872 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms