Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC16.65■□□□□ 0.26
HMGB1P09429 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB1P09429 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB1P09429 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC16.65■□□□□ 0.26
HMGB1P09429 MBP-201ENST00000354542 575 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGB1P09429 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB1P09429 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC16.65■□□□□ 0.26
HMGB1P09429 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB1P09429 LINC00685-201ENST00000391707 428 ntTSL 5 BASIC16.65■□□□□ 0.26
HMGB1P09429 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB1P09429 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB1P09429 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGB1P09429 BX284668.4-201ENST00000453917 508 ntBASIC16.65■□□□□ 0.26
HMGB1P09429 AC092658.1-201ENST00000505836 891 ntBASIC16.65■□□□□ 0.26
HMGB1P09429 SCARNA20.5-201ENST00000516991 142 ntBASIC16.65■□□□□ 0.26
HMGB1P09429 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC16.65■□□□□ 0.26
HMGB1P09429 POU5F1P2-201ENST00000521750 823 ntBASIC16.65■□□□□ 0.26
HMGB1P09429 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC16.65■□□□□ 0.26
HMGB1P09429 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
HMGB1P09429 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB1P09429 AC020917.4-201ENST00000623994 1999 ntBASIC16.65■□□□□ 0.26
HMGB1P09429 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC16.65■□□□□ 0.26
HMGB1P09429 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGB1P09429 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB1P09429 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
HMGB1P09429 AC067931.2-201ENST00000623655 2003 ntBASIC16.65■□□□□ 0.26
HMGB1P09429 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB1P09429 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
HMGB1P09429 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB1P09429 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB1P09429 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
HMGB1P09429 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC16.65■□□□□ 0.26
HMGB1P09429 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB1P09429 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB1P09429 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
HMGB1P09429 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.26
HMGB1P09429 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB1P09429 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB1P09429 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
HMGB1P09429 AC015909.3-201ENST00000572855 1794 ntBASIC16.64■□□□□ 0.25
HMGB1P09429 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC16.64■□□□□ 0.25
HMGB1P09429 VAMP2-201ENST00000316509 2153 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB1P09429 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC16.64■□□□□ 0.25
HMGB1P09429 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB1P09429 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB1P09429 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB1P09429 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC16.64■□□□□ 0.25
HMGB1P09429 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
HMGB1P09429 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB1P09429 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB1P09429 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC16.64■□□□□ 0.25
HMGB1P09429 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB1P09429 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB1P09429 SDCCAG3P2-201ENST00000326105 1023 ntBASIC16.64■□□□□ 0.25
HMGB1P09429 KRT17P5-201ENST00000332088 839 ntBASIC16.64■□□□□ 0.25
HMGB1P09429 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB1P09429 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB1P09429 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC16.64■□□□□ 0.25
HMGB1P09429 CYP46A4P-201ENST00000414953 267 ntBASIC16.64■□□□□ 0.25
HMGB1P09429 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC16.64■□□□□ 0.25
HMGB1P09429 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
HMGB1P09429 ARTN-209ENST00000479128 471 ntTSL 3 BASIC16.64■□□□□ 0.25
HMGB1P09429 SLC25A15P3-201ENST00000505530 290 ntBASIC16.64■□□□□ 0.25
HMGB1P09429 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC16.64■□□□□ 0.25
HMGB1P09429 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC16.64■□□□□ 0.25
HMGB1P09429 NDUFB10P1-201ENST00000567319 521 ntBASIC16.64■□□□□ 0.25
HMGB1P09429 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC16.64■□□□□ 0.25
HMGB1P09429 MIR4538-201ENST00000581377 78 ntBASIC16.64■□□□□ 0.25
HMGB1P09429 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC16.64■□□□□ 0.25
HMGB1P09429 TP53-221ENST00000615910 1149 ntTSL 5 BASIC16.64■□□□□ 0.25
HMGB1P09429 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB1P09429 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB1P09429 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC16.64■□□□□ 0.25
HMGB1P09429 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB1P09429 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB1P09429 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
HMGB1P09429 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC16.64■□□□□ 0.25
HMGB1P09429 PHB-210ENST00000511832 1509 ntTSL 2 BASIC16.64■□□□□ 0.25
HMGB1P09429 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB1P09429 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC16.64■□□□□ 0.25
HMGB1P09429 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB1P09429 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
HMGB1P09429 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC16.64■□□□□ 0.25
HMGB1P09429 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGB1P09429 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC16.63■□□□□ 0.25
HMGB1P09429 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
HMGB1P09429 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGB1P09429 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGB1P09429 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
HMGB1P09429 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
HMGB1P09429 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms