Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PCDHA3Q9Y5H8 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PCDHA3Q9Y5H8 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC23.54■■□□□ 1.36
PCDHA3Q9Y5H8 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC23.54■■□□□ 1.36
PCDHA3Q9Y5H8 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
PCDHA3Q9Y5H8 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
PCDHA3Q9Y5H8 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC23.54■■□□□ 1.36
PCDHA3Q9Y5H8 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
PCDHA3Q9Y5H8 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
PCDHA3Q9Y5H8 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
PCDHA3Q9Y5H8 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC23.53■■□□□ 1.36
PCDHA3Q9Y5H8 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
PCDHA3Q9Y5H8 TERT-206ENST00000508104 2486 ntTSL 5 BASIC23.53■■□□□ 1.36
PCDHA3Q9Y5H8 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHA3Q9Y5H8 AC012354.3-201ENST00000623734 483 ntBASIC23.53■■□□□ 1.36
PCDHA3Q9Y5H8 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
PCDHA3Q9Y5H8 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PCDHA3Q9Y5H8 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
PCDHA3Q9Y5H8 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC23.53■■□□□ 1.36
PCDHA3Q9Y5H8 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC23.52■■□□□ 1.36
PCDHA3Q9Y5H8 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHA3Q9Y5H8 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
PCDHA3Q9Y5H8 USF2-207ENST00000595068 1612 ntTSL 5 BASIC23.52■■□□□ 1.36
PCDHA3Q9Y5H8 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHA3Q9Y5H8 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC23.52■■□□□ 1.36
PCDHA3Q9Y5H8 AC103834.1-201ENST00000520383 144 ntBASIC23.52■■□□□ 1.36
PCDHA3Q9Y5H8 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC23.52■■□□□ 1.36
PCDHA3Q9Y5H8 GUSBP5-202ENST00000510805 1989 ntBASIC23.52■■□□□ 1.36
PCDHA3Q9Y5H8 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHA3Q9Y5H8 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHA3Q9Y5H8 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
PCDHA3Q9Y5H8 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC23.52■■□□□ 1.35
PCDHA3Q9Y5H8 COMT-203ENST00000403184 2217 ntTSL 2 BASIC23.51■■□□□ 1.35
PCDHA3Q9Y5H8 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHA3Q9Y5H8 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC23.51■■□□□ 1.35
PCDHA3Q9Y5H8 LSM7-203ENST00000585409 512 ntTSL 2 BASIC23.51■■□□□ 1.35
PCDHA3Q9Y5H8 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHA3Q9Y5H8 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHA3Q9Y5H8 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHA3Q9Y5H8 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHA3Q9Y5H8 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC23.51■■□□□ 1.35
PCDHA3Q9Y5H8 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC23.5■■□□□ 1.35
PCDHA3Q9Y5H8 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
PCDHA3Q9Y5H8 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC23.5■■□□□ 1.35
PCDHA3Q9Y5H8 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC23.5■■□□□ 1.35
PCDHA3Q9Y5H8 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC23.5■■□□□ 1.35
PCDHA3Q9Y5H8 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHA3Q9Y5H8 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHA3Q9Y5H8 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHA3Q9Y5H8 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHA3Q9Y5H8 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
PCDHA3Q9Y5H8 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC23.49■■□□□ 1.35
PCDHA3Q9Y5H8 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHA3Q9Y5H8 STK25-234ENST00000535007 2459 ntTSL 2 BASIC23.49■■□□□ 1.35
PCDHA3Q9Y5H8 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHA3Q9Y5H8 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHA3Q9Y5H8 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC23.49■■□□□ 1.35
PCDHA3Q9Y5H8 AL033527.3-201ENST00000566366 1196 ntBASIC23.49■■□□□ 1.35
PCDHA3Q9Y5H8 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHA3Q9Y5H8 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHA3Q9Y5H8 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
PCDHA3Q9Y5H8 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
PCDHA3Q9Y5H8 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
PCDHA3Q9Y5H8 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
PCDHA3Q9Y5H8 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
PCDHA3Q9Y5H8 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC23.48■■□□□ 1.35
PCDHA3Q9Y5H8 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
PCDHA3Q9Y5H8 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
PCDHA3Q9Y5H8 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
PCDHA3Q9Y5H8 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC23.47■■□□□ 1.35
PCDHA3Q9Y5H8 SNX5-217ENST00000606557 1087 ntBASIC23.47■■□□□ 1.35
PCDHA3Q9Y5H8 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
PCDHA3Q9Y5H8 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC23.47■■□□□ 1.35
PCDHA3Q9Y5H8 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
PCDHA3Q9Y5H8 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC23.47■■□□□ 1.35
PCDHA3Q9Y5H8 AL353803.4-201ENST00000565882 1934 ntBASIC23.47■■□□□ 1.35
PCDHA3Q9Y5H8 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
PCDHA3Q9Y5H8 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
PCDHA3Q9Y5H8 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
PCDHA3Q9Y5H8 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
PCDHA3Q9Y5H8 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
PCDHA3Q9Y5H8 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
PCDHA3Q9Y5H8 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC23.46■■□□□ 1.35
PCDHA3Q9Y5H8 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
PCDHA3Q9Y5H8 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC23.46■■□□□ 1.35
PCDHA3Q9Y5H8 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC23.46■■□□□ 1.35
PCDHA3Q9Y5H8 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
PCDHA3Q9Y5H8 LINC00526-201ENST00000581067 1875 ntBASIC23.45■■□□□ 1.35
PCDHA3Q9Y5H8 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC23.45■■□□□ 1.35
PCDHA3Q9Y5H8 ECEL1P1-201ENST00000373592 1742 ntBASIC23.45■■□□□ 1.34
PCDHA3Q9Y5H8 ESRRAP2-201ENST00000418437 1549 ntBASIC23.45■■□□□ 1.34
PCDHA3Q9Y5H8 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
PCDHA3Q9Y5H8 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC23.45■■□□□ 1.34
PCDHA3Q9Y5H8 AC103724.3-201ENST00000564481 992 ntBASIC23.45■■□□□ 1.34
PCDHA3Q9Y5H8 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
PCDHA3Q9Y5H8 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC23.45■■□□□ 1.34
PCDHA3Q9Y5H8 LINC00565-201ENST00000562710 2331 ntBASIC23.44■■□□□ 1.34
PCDHA3Q9Y5H8 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
PCDHA3Q9Y5H8 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
PCDHA3Q9Y5H8 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 12.3 ms