Protein–RNA interactions for Protein: Q9H3E2

SNX25, Sorting nexin-25, humanhuman

Predictions only

Length 840 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX25Q9H3E2 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
SNX25Q9H3E2 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC23.99■■□□□ 1.43
SNX25Q9H3E2 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC23.99■■□□□ 1.43
SNX25Q9H3E2 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC23.99■■□□□ 1.43
SNX25Q9H3E2 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SNX25Q9H3E2 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
SNX25Q9H3E2 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SNX25Q9H3E2 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SNX25Q9H3E2 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC23.99■■□□□ 1.43
SNX25Q9H3E2 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SNX25Q9H3E2 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC23.99■■□□□ 1.43
SNX25Q9H3E2 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
SNX25Q9H3E2 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SNX25Q9H3E2 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
SNX25Q9H3E2 VGF-203ENST00000611537 1622 ntTSL 5 BASIC23.99■■□□□ 1.43
SNX25Q9H3E2 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
SNX25Q9H3E2 DUX4L19-201ENST00000557448 1267 ntBASIC23.98■■□□□ 1.43
SNX25Q9H3E2 RALB-208ENST00000631312 311 ntTSL 5 BASIC23.98■■□□□ 1.43
SNX25Q9H3E2 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SNX25Q9H3E2 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
SNX25Q9H3E2 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SNX25Q9H3E2 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SNX25Q9H3E2 AC093323.1-202ENST00000635031 2045 ntBASIC23.98■■□□□ 1.43
SNX25Q9H3E2 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC23.98■■□□□ 1.43
SNX25Q9H3E2 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SNX25Q9H3E2 UNC93B3-201ENST00000308076 687 ntBASIC23.97■■□□□ 1.43
SNX25Q9H3E2 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
SNX25Q9H3E2 ASB1-202ENST00000409297 878 ntTSL 5 BASIC23.97■■□□□ 1.43
SNX25Q9H3E2 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
SNX25Q9H3E2 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC23.97■■□□□ 1.43
SNX25Q9H3E2 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SNX25Q9H3E2 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC23.97■■□□□ 1.43
SNX25Q9H3E2 AC009086.3-201ENST00000623486 1008 ntBASIC23.97■■□□□ 1.43
SNX25Q9H3E2 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC23.97■■□□□ 1.43
SNX25Q9H3E2 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SNX25Q9H3E2 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
SNX25Q9H3E2 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC23.96■■□□□ 1.43
SNX25Q9H3E2 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
SNX25Q9H3E2 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
SNX25Q9H3E2 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SNX25Q9H3E2 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
SNX25Q9H3E2 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
SNX25Q9H3E2 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
SNX25Q9H3E2 AL139246.5-201ENST00000606645 996 ntBASIC23.96■■□□□ 1.43
SNX25Q9H3E2 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SNX25Q9H3E2 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC23.96■■□□□ 1.43
SNX25Q9H3E2 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
SNX25Q9H3E2 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.43
SNX25Q9H3E2 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC23.95■■□□□ 1.43
SNX25Q9H3E2 SYT6-210ENST00000641643 1587 ntBASIC23.95■■□□□ 1.43
SNX25Q9H3E2 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
SNX25Q9H3E2 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC23.95■■□□□ 1.43
SNX25Q9H3E2 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
SNX25Q9H3E2 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
SNX25Q9H3E2 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
SNX25Q9H3E2 AC110285.6-201ENST00000617652 491 ntBASIC23.95■■□□□ 1.42
SNX25Q9H3E2 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
SNX25Q9H3E2 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
SNX25Q9H3E2 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
SNX25Q9H3E2 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
SNX25Q9H3E2 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SNX25Q9H3E2 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
SNX25Q9H3E2 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SNX25Q9H3E2 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
SNX25Q9H3E2 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
SNX25Q9H3E2 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SNX25Q9H3E2 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
SNX25Q9H3E2 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
SNX25Q9H3E2 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SNX25Q9H3E2 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
SNX25Q9H3E2 AC006455.2-201ENST00000429931 906 ntBASIC23.93■■□□□ 1.42
SNX25Q9H3E2 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC23.93■■□□□ 1.42
SNX25Q9H3E2 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC23.93■■□□□ 1.42
SNX25Q9H3E2 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
SNX25Q9H3E2 AL136162.1-201ENST00000607711 1078 ntBASIC23.93■■□□□ 1.42
SNX25Q9H3E2 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
SNX25Q9H3E2 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC23.93■■□□□ 1.42
SNX25Q9H3E2 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC23.93■■□□□ 1.42
SNX25Q9H3E2 FP325331.1-202ENST00000623531 1380 ntBASIC23.92■■□□□ 1.42
SNX25Q9H3E2 AC144652.1-201ENST00000609974 1624 ntBASIC23.92■■□□□ 1.42
SNX25Q9H3E2 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SNX25Q9H3E2 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
SNX25Q9H3E2 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.92■■□□□ 1.42
SNX25Q9H3E2 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SNX25Q9H3E2 PBX2P1-201ENST00000493219 1291 ntBASIC23.92■■□□□ 1.42
SNX25Q9H3E2 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
SNX25Q9H3E2 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SNX25Q9H3E2 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
SNX25Q9H3E2 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
SNX25Q9H3E2 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
SNX25Q9H3E2 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SNX25Q9H3E2 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SNX25Q9H3E2 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
SNX25Q9H3E2 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC23.91■■□□□ 1.42
SNX25Q9H3E2 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
SNX25Q9H3E2 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
SNX25Q9H3E2 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC23.91■■□□□ 1.42
SNX25Q9H3E2 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
SNX25Q9H3E2 SF1-220ENST00000626028 704 ntTSL 2 BASIC23.91■■□□□ 1.42
SNX25Q9H3E2 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms