Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLHC1Q8NHS4 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLHC1Q8NHS4 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
CLHC1Q8NHS4 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLHC1Q8NHS4 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLHC1Q8NHS4 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLHC1Q8NHS4 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLHC1Q8NHS4 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
CLHC1Q8NHS4 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLHC1Q8NHS4 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLHC1Q8NHS4 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLHC1Q8NHS4 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLHC1Q8NHS4 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLHC1Q8NHS4 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CLHC1Q8NHS4 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.54■■□□□ 1.04
CLHC1Q8NHS4 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.53■■□□□ 1.04
CLHC1Q8NHS4 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CLHC1Q8NHS4 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CLHC1Q8NHS4 AC079630.1-202ENST00000618127 1840 ntBASIC21.53■■□□□ 1.04
CLHC1Q8NHS4 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLHC1Q8NHS4 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLHC1Q8NHS4 AC103724.3-201ENST00000564481 992 ntBASIC21.53■■□□□ 1.04
CLHC1Q8NHS4 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLHC1Q8NHS4 AC079834.2-201ENST00000609776 1949 ntBASIC21.53■■□□□ 1.04
CLHC1Q8NHS4 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLHC1Q8NHS4 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.52■■□□□ 1.04
CLHC1Q8NHS4 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLHC1Q8NHS4 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLHC1Q8NHS4 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
CLHC1Q8NHS4 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
CLHC1Q8NHS4 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.52■■□□□ 1.04
CLHC1Q8NHS4 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLHC1Q8NHS4 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CLHC1Q8NHS4 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLHC1Q8NHS4 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.03
CLHC1Q8NHS4 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CLHC1Q8NHS4 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
CLHC1Q8NHS4 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
CLHC1Q8NHS4 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CLHC1Q8NHS4 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.51■■□□□ 1.03
CLHC1Q8NHS4 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.51■■□□□ 1.03
CLHC1Q8NHS4 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
CLHC1Q8NHS4 YBX1P4-201ENST00000392794 808 ntBASIC21.51■■□□□ 1.03
CLHC1Q8NHS4 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.51■■□□□ 1.03
CLHC1Q8NHS4 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.51■■□□□ 1.03
CLHC1Q8NHS4 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
CLHC1Q8NHS4 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CLHC1Q8NHS4 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.51■■□□□ 1.03
CLHC1Q8NHS4 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.51■■□□□ 1.03
CLHC1Q8NHS4 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLHC1Q8NHS4 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLHC1Q8NHS4 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLHC1Q8NHS4 AL117328.2-201ENST00000624617 1940 ntBASIC21.5■■□□□ 1.03
CLHC1Q8NHS4 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.5■■□□□ 1.03
CLHC1Q8NHS4 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
CLHC1Q8NHS4 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CLHC1Q8NHS4 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
CLHC1Q8NHS4 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
CLHC1Q8NHS4 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.49■■□□□ 1.03
CLHC1Q8NHS4 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLHC1Q8NHS4 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.49■■□□□ 1.03
CLHC1Q8NHS4 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLHC1Q8NHS4 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLHC1Q8NHS4 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLHC1Q8NHS4 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLHC1Q8NHS4 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.49■■□□□ 1.03
CLHC1Q8NHS4 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.49■■□□□ 1.03
CLHC1Q8NHS4 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLHC1Q8NHS4 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
CLHC1Q8NHS4 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLHC1Q8NHS4 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLHC1Q8NHS4 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLHC1Q8NHS4 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CLHC1Q8NHS4 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLHC1Q8NHS4 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.48■■□□□ 1.03
CLHC1Q8NHS4 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.48■■□□□ 1.03
CLHC1Q8NHS4 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.48■■□□□ 1.03
CLHC1Q8NHS4 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CLHC1Q8NHS4 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLHC1Q8NHS4 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CLHC1Q8NHS4 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLHC1Q8NHS4 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CLHC1Q8NHS4 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLHC1Q8NHS4 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLHC1Q8NHS4 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CLHC1Q8NHS4 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CLHC1Q8NHS4 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CLHC1Q8NHS4 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.47■■□□□ 1.03
CLHC1Q8NHS4 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
CLHC1Q8NHS4 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.47■■□□□ 1.03
CLHC1Q8NHS4 EP400NL-214ENST00000641289 2402 ntBASIC21.47■■□□□ 1.03
CLHC1Q8NHS4 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CLHC1Q8NHS4 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CLHC1Q8NHS4 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CLHC1Q8NHS4 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.46■■□□□ 1.03
CLHC1Q8NHS4 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.46■■□□□ 1.03
CLHC1Q8NHS4 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLHC1Q8NHS4 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLHC1Q8NHS4 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CLHC1Q8NHS4 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms