Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC65Q8IXS2 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC65Q8IXS2 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC65Q8IXS2 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC65Q8IXS2 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC24.97■■□□□ 1.59
CCDC65Q8IXS2 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC24.97■■□□□ 1.59
CCDC65Q8IXS2 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC65Q8IXS2 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC24.97■■□□□ 1.59
CCDC65Q8IXS2 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC24.97■■□□□ 1.59
CCDC65Q8IXS2 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC24.97■■□□□ 1.59
CCDC65Q8IXS2 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC24.97■■□□□ 1.59
CCDC65Q8IXS2 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC65Q8IXS2 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC24.97■■□□□ 1.59
CCDC65Q8IXS2 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC65Q8IXS2 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC65Q8IXS2 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC65Q8IXS2 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC24.96■■□□□ 1.59
CCDC65Q8IXS2 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC65Q8IXS2 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC65Q8IXS2 DUSP8P3-201ENST00000399571 1760 ntBASIC24.96■■□□□ 1.59
CCDC65Q8IXS2 KRT16P3-201ENST00000439127 1283 ntBASIC24.96■■□□□ 1.59
CCDC65Q8IXS2 MIR6724-1-201ENST00000616420 92 ntBASIC24.96■■□□□ 1.59
CCDC65Q8IXS2 MIR6724-2-201ENST00000616483 92 ntBASIC24.96■■□□□ 1.59
CCDC65Q8IXS2 MIR6724-4-201ENST00000617390 92 ntBASIC24.96■■□□□ 1.59
CCDC65Q8IXS2 MIR6724-3-201ENST00000622482 92 ntBASIC24.96■■□□□ 1.59
CCDC65Q8IXS2 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC65Q8IXS2 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC65Q8IXS2 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC24.96■■□□□ 1.59
CCDC65Q8IXS2 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC65Q8IXS2 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC65Q8IXS2 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC65Q8IXS2 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC24.95■■□□□ 1.59
CCDC65Q8IXS2 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
CCDC65Q8IXS2 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
CCDC65Q8IXS2 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC24.95■■□□□ 1.58
CCDC65Q8IXS2 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
CCDC65Q8IXS2 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC24.95■■□□□ 1.58
CCDC65Q8IXS2 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC24.94■■□□□ 1.58
CCDC65Q8IXS2 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC24.94■■□□□ 1.58
CCDC65Q8IXS2 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
CCDC65Q8IXS2 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC24.94■■□□□ 1.58
CCDC65Q8IXS2 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC24.94■■□□□ 1.58
CCDC65Q8IXS2 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC24.93■■□□□ 1.58
CCDC65Q8IXS2 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC24.93■■□□□ 1.58
CCDC65Q8IXS2 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC24.93■■□□□ 1.58
CCDC65Q8IXS2 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
CCDC65Q8IXS2 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC24.93■■□□□ 1.58
CCDC65Q8IXS2 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC24.93■■□□□ 1.58
CCDC65Q8IXS2 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
CCDC65Q8IXS2 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
CCDC65Q8IXS2 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC24.92■■□□□ 1.58
CCDC65Q8IXS2 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC24.92■■□□□ 1.58
CCDC65Q8IXS2 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC24.92■■□□□ 1.58
CCDC65Q8IXS2 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
CCDC65Q8IXS2 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
CCDC65Q8IXS2 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC24.92■■□□□ 1.58
CCDC65Q8IXS2 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
CCDC65Q8IXS2 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC24.92■■□□□ 1.58
CCDC65Q8IXS2 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC24.92■■□□□ 1.58
CCDC65Q8IXS2 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC24.92■■□□□ 1.58
CCDC65Q8IXS2 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC24.92■■□□□ 1.58
CCDC65Q8IXS2 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
CCDC65Q8IXS2 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC24.92■■□□□ 1.58
CCDC65Q8IXS2 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
CCDC65Q8IXS2 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC24.91■■□□□ 1.58
CCDC65Q8IXS2 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC65Q8IXS2 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC65Q8IXS2 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC65Q8IXS2 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC65Q8IXS2 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC65Q8IXS2 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC24.91■■□□□ 1.58
CCDC65Q8IXS2 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC65Q8IXS2 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
CCDC65Q8IXS2 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CCDC65Q8IXS2 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC24.9■■□□□ 1.58
CCDC65Q8IXS2 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC24.9■■□□□ 1.58
CCDC65Q8IXS2 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
CCDC65Q8IXS2 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC24.9■■□□□ 1.58
CCDC65Q8IXS2 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC24.9■■□□□ 1.58
CCDC65Q8IXS2 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC24.9■■□□□ 1.58
CCDC65Q8IXS2 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC24.9■■□□□ 1.58
CCDC65Q8IXS2 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC24.9■■□□□ 1.58
CCDC65Q8IXS2 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CCDC65Q8IXS2 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC24.9■■□□□ 1.58
CCDC65Q8IXS2 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC24.89■■□□□ 1.58
CCDC65Q8IXS2 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC24.89■■□□□ 1.58
CCDC65Q8IXS2 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
CCDC65Q8IXS2 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC24.89■■□□□ 1.58
CCDC65Q8IXS2 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC24.89■■□□□ 1.58
CCDC65Q8IXS2 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC24.89■■□□□ 1.57
CCDC65Q8IXS2 AC144652.1-201ENST00000609974 1624 ntBASIC24.89■■□□□ 1.57
CCDC65Q8IXS2 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
CCDC65Q8IXS2 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC24.89■■□□□ 1.57
CCDC65Q8IXS2 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
CCDC65Q8IXS2 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC24.88■■□□□ 1.57
CCDC65Q8IXS2 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC24.88■■□□□ 1.57
CCDC65Q8IXS2 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
CCDC65Q8IXS2 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
CCDC65Q8IXS2 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC24.87■■□□□ 1.57
CCDC65Q8IXS2 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC24.87■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms