Protein–RNA interactions for Protein: Q86VR2

RETREG3, Reticulophagy regulator 3, humanhuman

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3Q86VR2 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC21.46■■□□□ 1.03
RETREG3Q86VR2 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.46■■□□□ 1.03
RETREG3Q86VR2 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RETREG3Q86VR2 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RETREG3Q86VR2 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RETREG3Q86VR2 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
RETREG3Q86VR2 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
RETREG3Q86VR2 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
RETREG3Q86VR2 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.45■■□□□ 1.02
RETREG3Q86VR2 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RETREG3Q86VR2 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RETREG3Q86VR2 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.45■■□□□ 1.02
RETREG3Q86VR2 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RETREG3Q86VR2 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RETREG3Q86VR2 ESRRAP2-201ENST00000418437 1549 ntBASIC21.45■■□□□ 1.02
RETREG3Q86VR2 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.44■■□□□ 1.02
RETREG3Q86VR2 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RETREG3Q86VR2 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.44■■□□□ 1.02
RETREG3Q86VR2 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RETREG3Q86VR2 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.44■■□□□ 1.02
RETREG3Q86VR2 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RETREG3Q86VR2 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC21.44■■□□□ 1.02
RETREG3Q86VR2 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC21.44■■□□□ 1.02
RETREG3Q86VR2 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21.44■■□□□ 1.02
RETREG3Q86VR2 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RETREG3Q86VR2 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RETREG3Q86VR2 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.44■■□□□ 1.02
RETREG3Q86VR2 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RETREG3Q86VR2 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
RETREG3Q86VR2 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RETREG3Q86VR2 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RETREG3Q86VR2 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RETREG3Q86VR2 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.43■■□□□ 1.02
RETREG3Q86VR2 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
RETREG3Q86VR2 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
RETREG3Q86VR2 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
RETREG3Q86VR2 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.43■■□□□ 1.02
RETREG3Q86VR2 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
RETREG3Q86VR2 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RETREG3Q86VR2 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
RETREG3Q86VR2 ABHD17AP3-201ENST00000503096 1137 ntBASIC21.42■■□□□ 1.02
RETREG3Q86VR2 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.42■■□□□ 1.02
RETREG3Q86VR2 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RETREG3Q86VR2 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.41■■□□□ 1.02
RETREG3Q86VR2 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
RETREG3Q86VR2 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RETREG3Q86VR2 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RETREG3Q86VR2 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RETREG3Q86VR2 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
RETREG3Q86VR2 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RETREG3Q86VR2 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
RETREG3Q86VR2 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC21.4■■□□□ 1.02
RETREG3Q86VR2 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RETREG3Q86VR2 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.4■■□□□ 1.02
RETREG3Q86VR2 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RETREG3Q86VR2 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.4■■□□□ 1.02
RETREG3Q86VR2 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RETREG3Q86VR2 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.4■■□□□ 1.02
RETREG3Q86VR2 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
RETREG3Q86VR2 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.39■■□□□ 1.02
RETREG3Q86VR2 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
RETREG3Q86VR2 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
RETREG3Q86VR2 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RETREG3Q86VR2 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RETREG3Q86VR2 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
RETREG3Q86VR2 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RETREG3Q86VR2 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.39■■□□□ 1.01
RETREG3Q86VR2 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
RETREG3Q86VR2 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.39■■□□□ 1.01
RETREG3Q86VR2 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RETREG3Q86VR2 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RETREG3Q86VR2 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.38■■□□□ 1.01
RETREG3Q86VR2 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
RETREG3Q86VR2 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.38■■□□□ 1.01
RETREG3Q86VR2 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RETREG3Q86VR2 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
RETREG3Q86VR2 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC21.38■■□□□ 1.01
RETREG3Q86VR2 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC21.38■■□□□ 1.01
RETREG3Q86VR2 AC129492.7-201ENST00000622992 756 ntBASIC21.38■■□□□ 1.01
RETREG3Q86VR2 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.38■■□□□ 1.01
RETREG3Q86VR2 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RETREG3Q86VR2 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
RETREG3Q86VR2 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
RETREG3Q86VR2 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.38■■□□□ 1.01
RETREG3Q86VR2 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.38■■□□□ 1.01
RETREG3Q86VR2 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RETREG3Q86VR2 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RETREG3Q86VR2 AC139530.1-201ENST00000575312 1977 ntBASIC21.37■■□□□ 1.01
RETREG3Q86VR2 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RETREG3Q86VR2 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RETREG3Q86VR2 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
RETREG3Q86VR2 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RETREG3Q86VR2 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RETREG3Q86VR2 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
RETREG3Q86VR2 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RETREG3Q86VR2 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RETREG3Q86VR2 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RETREG3Q86VR2 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RETREG3Q86VR2 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RETREG3Q86VR2 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms