Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
USP54Q70EL1 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
USP54Q70EL1 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
USP54Q70EL1 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC30.47■■■□□ 2.47
USP54Q70EL1 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC30.47■■■□□ 2.47
USP54Q70EL1 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
USP54Q70EL1 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
USP54Q70EL1 MIR572-201ENST00000384983 95 ntBASIC30.47■■■□□ 2.47
USP54Q70EL1 RAB43-208ENST00000615093 783 ntTSL 5 BASIC30.47■■■□□ 2.47
USP54Q70EL1 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC30.47■■■□□ 2.47
USP54Q70EL1 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC30.47■■■□□ 2.47
USP54Q70EL1 EI24-213ENST00000618552 1747 ntTSL 5 BASIC30.47■■■□□ 2.47
USP54Q70EL1 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
USP54Q70EL1 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
USP54Q70EL1 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC30.46■■■□□ 2.47
USP54Q70EL1 AC133637.1-201ENST00000624115 1537 ntBASIC30.46■■■□□ 2.47
USP54Q70EL1 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
USP54Q70EL1 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC30.46■■■□□ 2.47
USP54Q70EL1 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
USP54Q70EL1 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
USP54Q70EL1 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC30.44■■■□□ 2.46
USP54Q70EL1 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
USP54Q70EL1 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
USP54Q70EL1 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC30.44■■■□□ 2.46
USP54Q70EL1 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC30.44■■■□□ 2.46
USP54Q70EL1 PARL-206ENST00000435888 1098 ntTSL 5 BASIC30.44■■■□□ 2.46
USP54Q70EL1 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC30.44■■■□□ 2.46
USP54Q70EL1 AL358852.1-201ENST00000623174 1268 ntBASIC30.44■■■□□ 2.46
USP54Q70EL1 SHF-207ENST00000560540 2062 ntTSL 5 BASIC30.44■■■□□ 2.46
USP54Q70EL1 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC30.44■■■□□ 2.46
USP54Q70EL1 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC30.43■■■□□ 2.46
USP54Q70EL1 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC30.43■■■□□ 2.46
USP54Q70EL1 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
USP54Q70EL1 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC30.43■■■□□ 2.46
USP54Q70EL1 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC30.43■■■□□ 2.46
USP54Q70EL1 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
USP54Q70EL1 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
USP54Q70EL1 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
USP54Q70EL1 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
USP54Q70EL1 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
USP54Q70EL1 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC30.42■■■□□ 2.46
USP54Q70EL1 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
USP54Q70EL1 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
USP54Q70EL1 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC30.41■■■□□ 2.46
USP54Q70EL1 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
USP54Q70EL1 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
USP54Q70EL1 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC30.41■■■□□ 2.46
USP54Q70EL1 AC123595.1-201ENST00000440769 1046 ntBASIC30.41■■■□□ 2.46
USP54Q70EL1 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC30.41■■■□□ 2.46
USP54Q70EL1 AC092437.1-201ENST00000624794 1048 ntBASIC30.41■■■□□ 2.46
USP54Q70EL1 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
USP54Q70EL1 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC30.4■■■□□ 2.46
USP54Q70EL1 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
USP54Q70EL1 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC30.4■■■□□ 2.46
USP54Q70EL1 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC30.4■■■□□ 2.46
USP54Q70EL1 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC30.39■■■□□ 2.46
USP54Q70EL1 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC30.39■■■□□ 2.46
USP54Q70EL1 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC30.39■■■□□ 2.46
USP54Q70EL1 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
USP54Q70EL1 AL354811.1-201ENST00000610286 706 ntBASIC30.39■■■□□ 2.46
USP54Q70EL1 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
USP54Q70EL1 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC30.39■■■□□ 2.46
USP54Q70EL1 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC30.39■■■□□ 2.46
USP54Q70EL1 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.39■■■□□ 2.46
USP54Q70EL1 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC30.39■■■□□ 2.45
USP54Q70EL1 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
USP54Q70EL1 IKBKGP1-201ENST00000612193 1073 ntBASIC30.39■■■□□ 2.45
USP54Q70EL1 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC30.38■■■□□ 2.45
USP54Q70EL1 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
USP54Q70EL1 DUX4L4-201ENST00000566884 1269 ntBASIC30.38■■■□□ 2.45
USP54Q70EL1 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
USP54Q70EL1 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
USP54Q70EL1 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
USP54Q70EL1 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC30.38■■■□□ 2.45
USP54Q70EL1 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC30.37■■■□□ 2.45
USP54Q70EL1 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC30.37■■■□□ 2.45
USP54Q70EL1 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC30.37■■■□□ 2.45
USP54Q70EL1 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC30.37■■■□□ 2.45
USP54Q70EL1 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC30.37■■■□□ 2.45
USP54Q70EL1 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC30.37■■■□□ 2.45
USP54Q70EL1 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
USP54Q70EL1 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
USP54Q70EL1 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC30.37■■■□□ 2.45
USP54Q70EL1 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC30.36■■■□□ 2.45
USP54Q70EL1 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC30.36■■■□□ 2.45
USP54Q70EL1 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC30.36■■■□□ 2.45
USP54Q70EL1 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
USP54Q70EL1 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
USP54Q70EL1 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC30.36■■■□□ 2.45
USP54Q70EL1 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC30.36■■■□□ 2.45
USP54Q70EL1 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
USP54Q70EL1 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC30.36■■■□□ 2.45
USP54Q70EL1 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC30.36■■■□□ 2.45
USP54Q70EL1 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
USP54Q70EL1 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
USP54Q70EL1 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC30.36■■■□□ 2.45
USP54Q70EL1 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC30.36■■■□□ 2.45
USP54Q70EL1 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
USP54Q70EL1 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
USP54Q70EL1 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC30.36■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms