Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC16.38■□□□□ 0.21
COL7A1Q02388 WWOX-218ENST00000627394 894 ntTSL 5 BASIC16.38■□□□□ 0.21
COL7A1Q02388 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
COL7A1Q02388 WT1-AS_3.1-201ENST00000613262 234 ntBASIC16.37■□□□□ 0.21
COL7A1Q02388 TMEM191A-211ENST00000637163 1067 ntBASIC16.37■□□□□ 0.21
COL7A1Q02388 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
COL7A1Q02388 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL7A1Q02388 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL7A1Q02388 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL7A1Q02388 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL7A1Q02388 STX7-201ENST00000367937 1090 ntTSL 5 BASIC16.37■□□□□ 0.21
COL7A1Q02388 MIR663A-201ENST00000385250 93 ntBASIC16.37■□□□□ 0.21
COL7A1Q02388 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC16.37■□□□□ 0.21
COL7A1Q02388 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC16.37■□□□□ 0.21
COL7A1Q02388 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC16.36■□□□□ 0.21
COL7A1Q02388 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
COL7A1Q02388 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL7A1Q02388 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC16.36■□□□□ 0.21
COL7A1Q02388 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL7A1Q02388 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL7A1Q02388 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC16.36■□□□□ 0.21
COL7A1Q02388 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL7A1Q02388 DBI-210ENST00000542275 757 ntTSL 5 BASIC16.36■□□□□ 0.21
COL7A1Q02388 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC16.36■□□□□ 0.21
COL7A1Q02388 SHF-206ENST00000560471 2499 ntTSL 5 BASIC16.36■□□□□ 0.21
COL7A1Q02388 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC16.36■□□□□ 0.21
COL7A1Q02388 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL7A1Q02388 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL7A1Q02388 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC16.35■□□□□ 0.21
COL7A1Q02388 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL7A1Q02388 AL499627.2-201ENST00000606283 725 ntBASIC16.35■□□□□ 0.21
COL7A1Q02388 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC16.35■□□□□ 0.21
COL7A1Q02388 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
COL7A1Q02388 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
COL7A1Q02388 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC16.35■□□□□ 0.21
COL7A1Q02388 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL7A1Q02388 USF2-207ENST00000595068 1612 ntTSL 5 BASIC16.35■□□□□ 0.21
COL7A1Q02388 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC16.35■□□□□ 0.21
COL7A1Q02388 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC16.35■□□□□ 0.21
COL7A1Q02388 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC16.35■□□□□ 0.21
COL7A1Q02388 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
COL7A1Q02388 SLC6A10P-202ENST00000431994 2058 ntBASIC16.35■□□□□ 0.21
COL7A1Q02388 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL7A1Q02388 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC16.35■□□□□ 0.21
COL7A1Q02388 AP005435.1-201ENST00000529293 1178 ntBASIC16.35■□□□□ 0.21
COL7A1Q02388 TPRG1LP1-201ENST00000598702 760 ntBASIC16.35■□□□□ 0.21
COL7A1Q02388 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL7A1Q02388 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL7A1Q02388 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
COL7A1Q02388 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL7A1Q02388 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
COL7A1Q02388 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
COL7A1Q02388 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
COL7A1Q02388 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
COL7A1Q02388 KRT18P6-201ENST00000555540 1265 ntBASIC16.34■□□□□ 0.21
COL7A1Q02388 AC008687.6-201ENST00000596318 630 ntBASIC16.34■□□□□ 0.21
COL7A1Q02388 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
COL7A1Q02388 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL7A1Q02388 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL7A1Q02388 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC16.33■□□□□ 0.21
COL7A1Q02388 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC16.33■□□□□ 0.21
COL7A1Q02388 AL109923.1-201ENST00000618799 583 ntBASIC16.33■□□□□ 0.21
COL7A1Q02388 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC16.33■□□□□ 0.21
COL7A1Q02388 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
COL7A1Q02388 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.2
COL7A1Q02388 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL7A1Q02388 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
COL7A1Q02388 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
COL7A1Q02388 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC16.33■□□□□ 0.2
COL7A1Q02388 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
COL7A1Q02388 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC16.32■□□□□ 0.2
COL7A1Q02388 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL7A1Q02388 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC16.32■□□□□ 0.2
COL7A1Q02388 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
COL7A1Q02388 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
COL7A1Q02388 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL7A1Q02388 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
COL7A1Q02388 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC16.32■□□□□ 0.2
COL7A1Q02388 AC091060.1-201ENST00000623524 1766 ntBASIC16.32■□□□□ 0.2
COL7A1Q02388 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
COL7A1Q02388 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
COL7A1Q02388 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL7A1Q02388 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL7A1Q02388 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL7A1Q02388 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC16.32■□□□□ 0.2
COL7A1Q02388 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL7A1Q02388 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC16.32■□□□□ 0.2
COL7A1Q02388 GALNS-213ENST00000569433 723 ntTSL 3 BASIC16.32■□□□□ 0.2
COL7A1Q02388 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL7A1Q02388 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC16.32■□□□□ 0.2
COL7A1Q02388 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
COL7A1Q02388 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC16.31■□□□□ 0.2
COL7A1Q02388 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL7A1Q02388 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
COL7A1Q02388 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC16.31■□□□□ 0.2
COL7A1Q02388 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL7A1Q02388 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL7A1Q02388 COX20-201ENST00000366528 568 ntTSL 2 BASIC16.31■□□□□ 0.2
COL7A1Q02388 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL7A1Q02388 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms