Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF4P78317 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.83■□□□□ 0.93
RNF4P78317 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.83■□□□□ 0.93
RNF4P78317 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
RNF4P78317 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
RNF4P78317 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
RNF4P78317 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
RNF4P78317 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
RNF4P78317 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
RNF4P78317 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RNF4P78317 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RNF4P78317 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RNF4P78317 DUX4L19-201ENST00000557448 1267 ntBASIC20.82■□□□□ 0.92
RNF4P78317 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RNF4P78317 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.82■□□□□ 0.92
RNF4P78317 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
RNF4P78317 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RNF4P78317 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RNF4P78317 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.81■□□□□ 0.92
RNF4P78317 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RNF4P78317 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RNF4P78317 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RNF4P78317 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RNF4P78317 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RNF4P78317 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
RNF4P78317 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.81■□□□□ 0.92
RNF4P78317 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
RNF4P78317 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RNF4P78317 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RNF4P78317 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.81■□□□□ 0.92
RNF4P78317 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNF4P78317 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
RNF4P78317 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
RNF4P78317 UNC93B3-201ENST00000308076 687 ntBASIC20.8■□□□□ 0.92
RNF4P78317 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNF4P78317 AL139246.5-201ENST00000606645 996 ntBASIC20.8■□□□□ 0.92
RNF4P78317 AC110285.6-201ENST00000617652 491 ntBASIC20.8■□□□□ 0.92
RNF4P78317 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.8■□□□□ 0.92
RNF4P78317 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.79■□□□□ 0.92
RNF4P78317 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RNF4P78317 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
RNF4P78317 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RNF4P78317 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RNF4P78317 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.79■□□□□ 0.92
RNF4P78317 AC009086.3-201ENST00000623486 1008 ntBASIC20.79■□□□□ 0.92
RNF4P78317 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RNF4P78317 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
RNF4P78317 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
RNF4P78317 SYT6-210ENST00000641643 1587 ntBASIC20.79■□□□□ 0.92
RNF4P78317 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
RNF4P78317 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
RNF4P78317 AC144652.1-201ENST00000609974 1624 ntBASIC20.78■□□□□ 0.92
RNF4P78317 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
RNF4P78317 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF4P78317 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF4P78317 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
RNF4P78317 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF4P78317 FP325331.1-202ENST00000623531 1380 ntBASIC20.78■□□□□ 0.92
RNF4P78317 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RNF4P78317 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.78■□□□□ 0.92
RNF4P78317 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.78■□□□□ 0.92
RNF4P78317 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RNF4P78317 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF4P78317 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
RNF4P78317 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
RNF4P78317 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF4P78317 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF4P78317 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF4P78317 AC006455.2-201ENST00000429931 906 ntBASIC20.77■□□□□ 0.92
RNF4P78317 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.77■□□□□ 0.92
RNF4P78317 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF4P78317 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
RNF4P78317 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
RNF4P78317 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.77■□□□□ 0.92
RNF4P78317 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.77■□□□□ 0.92
RNF4P78317 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF4P78317 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF4P78317 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
RNF4P78317 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF4P78317 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.76■□□□□ 0.91
RNF4P78317 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.76■□□□□ 0.91
RNF4P78317 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.76■□□□□ 0.91
RNF4P78317 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RNF4P78317 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
RNF4P78317 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RNF4P78317 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.76■□□□□ 0.91
RNF4P78317 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RNF4P78317 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF4P78317 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNF4P78317 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
RNF4P78317 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNF4P78317 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RNF4P78317 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RNF4P78317 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNF4P78317 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNF4P78317 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
RNF4P78317 SERBP1P1-201ENST00000396021 1160 ntBASIC20.75■□□□□ 0.91
RNF4P78317 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNF4P78317 AL136162.1-201ENST00000607711 1078 ntBASIC20.75■□□□□ 0.91
RNF4P78317 AC079630.1-202ENST00000618127 1840 ntBASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms