Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC16.83■□□□□ 0.28
FOXA3P55318 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA3P55318 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC16.83■□□□□ 0.28
FOXA3P55318 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
FOXA3P55318 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC16.83■□□□□ 0.28
FOXA3P55318 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA3P55318 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA3P55318 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
FOXA3P55318 CD37-213ENST00000598095 1598 ntTSL 2 BASIC16.82■□□□□ 0.28
FOXA3P55318 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA3P55318 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC16.82■□□□□ 0.28
FOXA3P55318 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA3P55318 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC16.82■□□□□ 0.28
FOXA3P55318 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA3P55318 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC16.82■□□□□ 0.28
FOXA3P55318 MYB-221ENST00000527615 2381 ntTSL 5 BASIC16.82■□□□□ 0.28
FOXA3P55318 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC16.82■□□□□ 0.28
FOXA3P55318 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA3P55318 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA3P55318 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA3P55318 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA3P55318 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA3P55318 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC16.81■□□□□ 0.28
FOXA3P55318 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA3P55318 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA3P55318 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA3P55318 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
FOXA3P55318 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC16.81■□□□□ 0.28
FOXA3P55318 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC16.81■□□□□ 0.28
FOXA3P55318 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC16.81■□□□□ 0.28
FOXA3P55318 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA3P55318 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC16.81■□□□□ 0.28
FOXA3P55318 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA3P55318 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC16.8■□□□□ 0.28
FOXA3P55318 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA3P55318 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
FOXA3P55318 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA3P55318 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC16.8■□□□□ 0.28
FOXA3P55318 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
FOXA3P55318 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC16.8■□□□□ 0.28
FOXA3P55318 AL157400.5-201ENST00000507624 621 ntBASIC16.8■□□□□ 0.28
FOXA3P55318 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC16.8■□□□□ 0.28
FOXA3P55318 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA3P55318 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA3P55318 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
FOXA3P55318 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
FOXA3P55318 SMPD5-203ENST00000639008 1464 ntBASIC16.8■□□□□ 0.28
FOXA3P55318 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
FOXA3P55318 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA3P55318 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA3P55318 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA3P55318 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA3P55318 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA3P55318 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA3P55318 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA3P55318 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA3P55318 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA3P55318 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC16.79■□□□□ 0.28
FOXA3P55318 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA3P55318 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA3P55318 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA3P55318 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA3P55318 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA3P55318 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC16.78■□□□□ 0.28
FOXA3P55318 H19-210ENST00000439725 1929 ntTSL 2 BASIC16.78■□□□□ 0.28
FOXA3P55318 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA3P55318 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
FOXA3P55318 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
FOXA3P55318 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC16.78■□□□□ 0.28
FOXA3P55318 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA3P55318 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
FOXA3P55318 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA3P55318 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA3P55318 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC16.78■□□□□ 0.28
FOXA3P55318 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA3P55318 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
FOXA3P55318 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
FOXA3P55318 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA3P55318 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA3P55318 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA3P55318 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC16.77■□□□□ 0.28
FOXA3P55318 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC16.77■□□□□ 0.28
FOXA3P55318 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA3P55318 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA3P55318 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA3P55318 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA3P55318 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA3P55318 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC16.77■□□□□ 0.28
FOXA3P55318 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
FOXA3P55318 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
FOXA3P55318 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
FOXA3P55318 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
FOXA3P55318 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
FOXA3P55318 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
FOXA3P55318 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
FOXA3P55318 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC16.76■□□□□ 0.27
FOXA3P55318 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
FOXA3P55318 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA3P55318 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA3P55318 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms