Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC26.55■■□□□ 1.84
SHMT1P34896 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
SHMT1P34896 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC26.55■■□□□ 1.84
SHMT1P34896 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
SHMT1P34896 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC26.55■■□□□ 1.84
SHMT1P34896 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
SHMT1P34896 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
SHMT1P34896 SNX3-202ENST00000349379 890 ntTSL 2 BASIC26.54■■□□□ 1.84
SHMT1P34896 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SHMT1P34896 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC26.53■■□□□ 1.84
SHMT1P34896 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
SHMT1P34896 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
SHMT1P34896 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC26.53■■□□□ 1.84
SHMT1P34896 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
SHMT1P34896 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC26.53■■□□□ 1.84
SHMT1P34896 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
SHMT1P34896 AC233992.3-201ENST00000607491 485 ntBASIC26.53■■□□□ 1.84
SHMT1P34896 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
SHMT1P34896 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.84
SHMT1P34896 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
SHMT1P34896 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
SHMT1P34896 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
SHMT1P34896 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC26.52■■□□□ 1.84
SHMT1P34896 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
SHMT1P34896 BX842568.3-201ENST00000418104 571 ntBASIC26.52■■□□□ 1.84
SHMT1P34896 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC26.52■■□□□ 1.84
SHMT1P34896 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC26.52■■□□□ 1.84
SHMT1P34896 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.84
SHMT1P34896 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC26.51■■□□□ 1.84
SHMT1P34896 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC26.51■■□□□ 1.83
SHMT1P34896 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
SHMT1P34896 LINC00543-201ENST00000567234 1845 ntBASIC26.51■■□□□ 1.83
SHMT1P34896 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC26.51■■□□□ 1.83
SHMT1P34896 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC26.51■■□□□ 1.83
SHMT1P34896 LINC01124-201ENST00000409786 2117 ntBASIC26.51■■□□□ 1.83
SHMT1P34896 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC26.51■■□□□ 1.83
SHMT1P34896 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
SHMT1P34896 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC26.5■■□□□ 1.83
SHMT1P34896 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
SHMT1P34896 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC26.5■■□□□ 1.83
SHMT1P34896 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
SHMT1P34896 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC26.5■■□□□ 1.83
SHMT1P34896 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
SHMT1P34896 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
SHMT1P34896 AL139125.2-201ENST00000623134 1869 ntBASIC26.5■■□□□ 1.83
SHMT1P34896 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
SHMT1P34896 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
SHMT1P34896 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC26.49■■□□□ 1.83
SHMT1P34896 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC26.49■■□□□ 1.83
SHMT1P34896 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC26.48■■□□□ 1.83
SHMT1P34896 SHD-204ENST00000599689 1729 ntTSL 5 BASIC26.48■■□□□ 1.83
SHMT1P34896 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
SHMT1P34896 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SHMT1P34896 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC26.48■■□□□ 1.83
SHMT1P34896 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC26.48■■□□□ 1.83
SHMT1P34896 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
SHMT1P34896 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC26.47■■□□□ 1.83
SHMT1P34896 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
SHMT1P34896 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
SHMT1P34896 MPST-208ENST00000628507 698 ntTSL 5 BASIC26.47■■□□□ 1.83
SHMT1P34896 AC004812.2-201ENST00000611079 2094 ntBASIC26.46■■□□□ 1.83
SHMT1P34896 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC26.46■■□□□ 1.83
SHMT1P34896 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
SHMT1P34896 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
SHMT1P34896 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
SHMT1P34896 SLC47A1P1-202ENST00000449666 945 ntBASIC26.46■■□□□ 1.83
SHMT1P34896 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC26.46■■□□□ 1.83
SHMT1P34896 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
SHMT1P34896 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
SHMT1P34896 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
SHMT1P34896 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC26.45■■□□□ 1.83
SHMT1P34896 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC26.45■■□□□ 1.83
SHMT1P34896 RHOF-204ENST00000537265 699 ntTSL 2 BASIC26.45■■□□□ 1.82
SHMT1P34896 AL499627.2-201ENST00000606283 725 ntBASIC26.45■■□□□ 1.82
SHMT1P34896 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.82
SHMT1P34896 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC26.45■■□□□ 1.82
SHMT1P34896 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
SHMT1P34896 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
SHMT1P34896 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC26.45■■□□□ 1.82
SHMT1P34896 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
SHMT1P34896 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC26.44■■□□□ 1.82
SHMT1P34896 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
SHMT1P34896 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
SHMT1P34896 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
SHMT1P34896 FP325331.1-202ENST00000623531 1380 ntBASIC26.44■■□□□ 1.82
SHMT1P34896 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
SHMT1P34896 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC26.44■■□□□ 1.82
SHMT1P34896 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
SHMT1P34896 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
SHMT1P34896 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
SHMT1P34896 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
SHMT1P34896 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC26.43■■□□□ 1.82
SHMT1P34896 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC26.43■■□□□ 1.82
SHMT1P34896 DUX4L4-201ENST00000566884 1269 ntBASIC26.43■■□□□ 1.82
SHMT1P34896 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC26.43■■□□□ 1.82
SHMT1P34896 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
SHMT1P34896 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
SHMT1P34896 AC133637.1-201ENST00000624115 1537 ntBASIC26.43■■□□□ 1.82
SHMT1P34896 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC26.43■■□□□ 1.82
SHMT1P34896 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC26.43■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms