Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC24.69■■□□□ 1.54
TPM1P09493 SPCS2P3-201ENST00000500401 656 ntBASIC24.69■■□□□ 1.54
TPM1P09493 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC24.69■■□□□ 1.54
TPM1P09493 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
TPM1P09493 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
TPM1P09493 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
TPM1P09493 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
TPM1P09493 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
TPM1P09493 ALDH1A3-203ENST00000557963 1670 ntBASIC24.69■■□□□ 1.54
TPM1P09493 AC137767.1-201ENST00000602918 1920 ntBASIC24.69■■□□□ 1.54
TPM1P09493 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
TPM1P09493 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.68■■□□□ 1.54
TPM1P09493 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC24.68■■□□□ 1.54
TPM1P09493 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC24.68■■□□□ 1.54
TPM1P09493 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
TPM1P09493 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC24.68■■□□□ 1.54
TPM1P09493 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
TPM1P09493 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
TPM1P09493 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
TPM1P09493 H19-210ENST00000439725 1929 ntTSL 2 BASIC24.67■■□□□ 1.54
TPM1P09493 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
TPM1P09493 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
TPM1P09493 AC127496.7-201ENST00000625110 1798 ntBASIC24.67■■□□□ 1.54
TPM1P09493 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
TPM1P09493 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
TPM1P09493 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
TPM1P09493 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC24.66■■□□□ 1.54
TPM1P09493 EI24-204ENST00000527235 1625 ntTSL 5 BASIC24.66■■□□□ 1.54
TPM1P09493 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC24.66■■□□□ 1.54
TPM1P09493 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
TPM1P09493 AC011551.1-201ENST00000614101 683 ntBASIC24.66■■□□□ 1.54
TPM1P09493 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC24.66■■□□□ 1.54
TPM1P09493 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC24.66■■□□□ 1.54
TPM1P09493 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
TPM1P09493 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
TPM1P09493 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC24.66■■□□□ 1.54
TPM1P09493 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
TPM1P09493 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
TPM1P09493 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
TPM1P09493 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
TPM1P09493 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
TPM1P09493 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
TPM1P09493 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
TPM1P09493 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC24.65■■□□□ 1.54
TPM1P09493 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
TPM1P09493 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC24.65■■□□□ 1.54
TPM1P09493 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC24.65■■□□□ 1.54
TPM1P09493 LINC00526-201ENST00000581067 1875 ntBASIC24.65■■□□□ 1.54
TPM1P09493 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
TPM1P09493 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
TPM1P09493 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
TPM1P09493 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC24.65■■□□□ 1.54
TPM1P09493 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
TPM1P09493 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
TPM1P09493 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
TPM1P09493 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
TPM1P09493 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC24.64■■□□□ 1.54
TPM1P09493 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
TPM1P09493 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
TPM1P09493 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
TPM1P09493 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
TPM1P09493 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC24.64■■□□□ 1.53
TPM1P09493 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
TPM1P09493 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
TPM1P09493 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC24.64■■□□□ 1.53
TPM1P09493 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC24.63■■□□□ 1.53
TPM1P09493 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
TPM1P09493 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
TPM1P09493 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC24.63■■□□□ 1.53
TPM1P09493 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
TPM1P09493 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC24.63■■□□□ 1.53
TPM1P09493 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
TPM1P09493 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
TPM1P09493 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
TPM1P09493 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
TPM1P09493 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
TPM1P09493 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
TPM1P09493 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
TPM1P09493 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC24.62■■□□□ 1.53
TPM1P09493 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
TPM1P09493 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
TPM1P09493 DUX4L9-201ENST00000449051 1259 ntBASIC24.62■■□□□ 1.53
TPM1P09493 AL024507.2-201ENST00000606070 2574 ntBASIC24.62■■□□□ 1.53
TPM1P09493 HYI-213ENST00000583037 1322 ntTSL 5 BASIC24.61■■□□□ 1.53
TPM1P09493 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
TPM1P09493 LONRF2P2-201ENST00000439212 571 ntBASIC24.61■■□□□ 1.53
TPM1P09493 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
TPM1P09493 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC24.61■■□□□ 1.53
TPM1P09493 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
TPM1P09493 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
TPM1P09493 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
TPM1P09493 ECEL1P1-201ENST00000373592 1742 ntBASIC24.61■■□□□ 1.53
TPM1P09493 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
TPM1P09493 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC24.6■■□□□ 1.53
TPM1P09493 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
TPM1P09493 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
TPM1P09493 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
TPM1P09493 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
TPM1P09493 AC131274.2-201ENST00000580697 1507 ntBASIC24.6■■□□□ 1.53
TPM1P09493 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms