Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC28.64■■■□□ 2.18
CACNA1FO60840 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC28.64■■■□□ 2.18
CACNA1FO60840 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC28.64■■■□□ 2.18
CACNA1FO60840 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC28.64■■■□□ 2.18
CACNA1FO60840 MIR638-201ENST00000385237 100 ntBASIC28.64■■■□□ 2.17
CACNA1FO60840 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
CACNA1FO60840 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC28.63■■■□□ 2.17
CACNA1FO60840 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
CACNA1FO60840 AL138724.1-201ENST00000606771 1088 ntBASIC28.63■■■□□ 2.17
CACNA1FO60840 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC28.63■■■□□ 2.17
CACNA1FO60840 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
CACNA1FO60840 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
CACNA1FO60840 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC28.62■■■□□ 2.17
CACNA1FO60840 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC28.62■■■□□ 2.17
CACNA1FO60840 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC28.62■■■□□ 2.17
CACNA1FO60840 GTSE1-AS1-202ENST00000623117 1518 ntBASIC28.62■■■□□ 2.17
CACNA1FO60840 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC28.62■■■□□ 2.17
CACNA1FO60840 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC28.62■■■□□ 2.17
CACNA1FO60840 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
CACNA1FO60840 SERBP1P1-201ENST00000396021 1160 ntBASIC28.62■■■□□ 2.17
CACNA1FO60840 SRD5A1P1-201ENST00000442297 786 ntBASIC28.62■■■□□ 2.17
CACNA1FO60840 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
CACNA1FO60840 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
CACNA1FO60840 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC28.61■■■□□ 2.17
CACNA1FO60840 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC28.61■■■□□ 2.17
CACNA1FO60840 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC28.61■■■□□ 2.17
CACNA1FO60840 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
CACNA1FO60840 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
CACNA1FO60840 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC28.61■■■□□ 2.17
CACNA1FO60840 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC28.61■■■□□ 2.17
CACNA1FO60840 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC28.61■■■□□ 2.17
CACNA1FO60840 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
CACNA1FO60840 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC28.6■■■□□ 2.17
CACNA1FO60840 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
CACNA1FO60840 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC28.6■■■□□ 2.17
CACNA1FO60840 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
CACNA1FO60840 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC28.59■■■□□ 2.17
CACNA1FO60840 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC28.59■■■□□ 2.17
CACNA1FO60840 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC28.59■■■□□ 2.17
CACNA1FO60840 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC28.59■■■□□ 2.17
CACNA1FO60840 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
CACNA1FO60840 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
CACNA1FO60840 AC024257.2-201ENST00000549699 147 ntBASIC28.59■■■□□ 2.17
CACNA1FO60840 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC28.59■■■□□ 2.17
CACNA1FO60840 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
CACNA1FO60840 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC28.58■■■□□ 2.17
CACNA1FO60840 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC28.58■■■□□ 2.17
CACNA1FO60840 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
CACNA1FO60840 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
CACNA1FO60840 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
CACNA1FO60840 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
CACNA1FO60840 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC28.57■■■□□ 2.16
CACNA1FO60840 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC28.57■■■□□ 2.16
CACNA1FO60840 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
CACNA1FO60840 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC28.57■■■□□ 2.16
CACNA1FO60840 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC28.57■■■□□ 2.16
CACNA1FO60840 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC28.57■■■□□ 2.16
CACNA1FO60840 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
CACNA1FO60840 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC28.57■■■□□ 2.16
CACNA1FO60840 NALT1-201ENST00000429224 738 ntTSL 5 BASIC28.57■■■□□ 2.16
CACNA1FO60840 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC28.57■■■□□ 2.16
CACNA1FO60840 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
CACNA1FO60840 AC133561.4-201ENST00000566112 224 ntBASIC28.57■■■□□ 2.16
CACNA1FO60840 AL031432.3-201ENST00000607698 485 ntBASIC28.57■■■□□ 2.16
CACNA1FO60840 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC28.56■■■□□ 2.16
CACNA1FO60840 AC019069.1-201ENST00000610008 1333 ntBASIC28.56■■■□□ 2.16
CACNA1FO60840 AC135279.3-201ENST00000610945 1311 ntBASIC28.56■■■□□ 2.16
CACNA1FO60840 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC28.56■■■□□ 2.16
CACNA1FO60840 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
CACNA1FO60840 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC28.56■■■□□ 2.16
CACNA1FO60840 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC28.56■■■□□ 2.16
CACNA1FO60840 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
CACNA1FO60840 SYT6-210ENST00000641643 1587 ntBASIC28.56■■■□□ 2.16
CACNA1FO60840 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
CACNA1FO60840 AL139246.5-201ENST00000606645 996 ntBASIC28.55■■■□□ 2.16
CACNA1FO60840 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC28.55■■■□□ 2.16
CACNA1FO60840 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC28.55■■■□□ 2.16
CACNA1FO60840 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC28.55■■■□□ 2.16
CACNA1FO60840 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC28.55■■■□□ 2.16
CACNA1FO60840 UNC93B3-201ENST00000308076 687 ntBASIC28.55■■■□□ 2.16
CACNA1FO60840 AC092171.4-201ENST00000609130 632 ntBASIC28.55■■■□□ 2.16
CACNA1FO60840 AC009086.3-201ENST00000623486 1008 ntBASIC28.55■■■□□ 2.16
CACNA1FO60840 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
CACNA1FO60840 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
CACNA1FO60840 SLC47A1P1-202ENST00000449666 945 ntBASIC28.54■■■□□ 2.16
CACNA1FO60840 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC28.54■■■□□ 2.16
CACNA1FO60840 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC28.54■■■□□ 2.16
CACNA1FO60840 AL499627.2-201ENST00000606283 725 ntBASIC28.54■■■□□ 2.16
CACNA1FO60840 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC28.54■■■□□ 2.16
CACNA1FO60840 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
CACNA1FO60840 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC28.54■■■□□ 2.16
CACNA1FO60840 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC28.53■■■□□ 2.16
CACNA1FO60840 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC28.53■■■□□ 2.16
CACNA1FO60840 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC28.53■■■□□ 2.16
CACNA1FO60840 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
CACNA1FO60840 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
CACNA1FO60840 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
CACNA1FO60840 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC28.53■■■□□ 2.16
CACNA1FO60840 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
CACNA1FO60840 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms