Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SSX4O60224 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SSX4O60224 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SSX4O60224 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SSX4O60224 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SSX4O60224 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SSX4O60224 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SSX4O60224 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SSX4O60224 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SSX4O60224 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC20.25■□□□□ 0.83
SSX4O60224 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SSX4O60224 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SSX4O60224 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.24■□□□□ 0.83
SSX4O60224 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SSX4O60224 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SSX4O60224 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SSX4O60224 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
SSX4O60224 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.24■□□□□ 0.83
SSX4O60224 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.24■□□□□ 0.83
SSX4O60224 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SSX4O60224 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SSX4O60224 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SSX4O60224 AC019069.1-201ENST00000610008 1333 ntBASIC20.24■□□□□ 0.83
SSX4O60224 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
SSX4O60224 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SSX4O60224 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SSX4O60224 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
SSX4O60224 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
SSX4O60224 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SSX4O60224 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SSX4O60224 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
SSX4O60224 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.23■□□□□ 0.83
SSX4O60224 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SSX4O60224 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SSX4O60224 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SSX4O60224 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SSX4O60224 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SSX4O60224 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SSX4O60224 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SSX4O60224 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SSX4O60224 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.22■□□□□ 0.83
SSX4O60224 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.22■□□□□ 0.83
SSX4O60224 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SSX4O60224 KRT18P24-201ENST00000344739 1156 ntBASIC20.22■□□□□ 0.83
SSX4O60224 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
SSX4O60224 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SSX4O60224 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
SSX4O60224 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SSX4O60224 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.22■□□□□ 0.83
SSX4O60224 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SSX4O60224 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.22■□□□□ 0.83
SSX4O60224 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SSX4O60224 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SSX4O60224 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SSX4O60224 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.21■□□□□ 0.83
SSX4O60224 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.21■□□□□ 0.83
SSX4O60224 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SSX4O60224 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.21■□□□□ 0.83
SSX4O60224 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SSX4O60224 AC008406.3-201ENST00000620001 1374 ntBASIC20.21■□□□□ 0.83
SSX4O60224 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SSX4O60224 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SSX4O60224 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC20.2■□□□□ 0.82
SSX4O60224 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SSX4O60224 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SSX4O60224 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.2■□□□□ 0.82
SSX4O60224 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.2■□□□□ 0.82
SSX4O60224 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.2■□□□□ 0.82
SSX4O60224 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.19■□□□□ 0.82
SSX4O60224 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SSX4O60224 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SSX4O60224 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.19■□□□□ 0.82
SSX4O60224 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SSX4O60224 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SSX4O60224 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SSX4O60224 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.19■□□□□ 0.82
SSX4O60224 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SSX4O60224 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SSX4O60224 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SSX4O60224 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SSX4O60224 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SSX4O60224 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
SSX4O60224 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
SSX4O60224 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SSX4O60224 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SSX4O60224 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SSX4O60224 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SSX4O60224 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SSX4O60224 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.18■□□□□ 0.82
SSX4O60224 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
SSX4O60224 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC20.18■□□□□ 0.82
SSX4O60224 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SSX4O60224 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
SSX4O60224 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
SSX4O60224 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SSX4O60224 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.17■□□□□ 0.82
SSX4O60224 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.17■□□□□ 0.82
SSX4O60224 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
SSX4O60224 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.17■□□□□ 0.82
SSX4O60224 KRT16P3-201ENST00000439127 1283 ntBASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms