Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC21.72■■□□□ 1.07
CACNA1AO00555 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CACNA1AO00555 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
CACNA1AO00555 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
CACNA1AO00555 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CACNA1AO00555 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.71■■□□□ 1.07
CACNA1AO00555 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CACNA1AO00555 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC21.71■■□□□ 1.07
CACNA1AO00555 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.71■■□□□ 1.07
CACNA1AO00555 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
CACNA1AO00555 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.71■■□□□ 1.07
CACNA1AO00555 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CACNA1AO00555 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CACNA1AO00555 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.71■■□□□ 1.07
CACNA1AO00555 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.71■■□□□ 1.07
CACNA1AO00555 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CACNA1AO00555 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
CACNA1AO00555 ECEL1P3-201ENST00000427961 737 ntBASIC21.71■■□□□ 1.07
CACNA1AO00555 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21.71■■□□□ 1.07
CACNA1AO00555 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.71■■□□□ 1.07
CACNA1AO00555 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CACNA1AO00555 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC21.7■■□□□ 1.06
CACNA1AO00555 pRNA.6-201ENST00000610482 90 ntBASIC21.7■■□□□ 1.06
CACNA1AO00555 pRNA.5-201ENST00000612139 90 ntBASIC21.7■■□□□ 1.06
CACNA1AO00555 pRNA.11-201ENST00000618423 90 ntBASIC21.7■■□□□ 1.06
CACNA1AO00555 pRNA.13-201ENST00000619112 90 ntBASIC21.7■■□□□ 1.06
CACNA1AO00555 AC092118.2-201ENST00000613495 667 ntBASIC21.7■■□□□ 1.06
CACNA1AO00555 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CACNA1AO00555 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CACNA1AO00555 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CACNA1AO00555 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC21.69■■□□□ 1.06
CACNA1AO00555 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CACNA1AO00555 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CACNA1AO00555 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.69■■□□□ 1.06
CACNA1AO00555 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CACNA1AO00555 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.69■■□□□ 1.06
CACNA1AO00555 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.69■■□□□ 1.06
CACNA1AO00555 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
CACNA1AO00555 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
CACNA1AO00555 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CACNA1AO00555 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
CACNA1AO00555 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
CACNA1AO00555 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CACNA1AO00555 DUX4L4-201ENST00000566884 1269 ntBASIC21.68■■□□□ 1.06
CACNA1AO00555 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC21.68■■□□□ 1.06
CACNA1AO00555 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
CACNA1AO00555 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CACNA1AO00555 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CACNA1AO00555 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CACNA1AO00555 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.68■■□□□ 1.06
CACNA1AO00555 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CACNA1AO00555 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
CACNA1AO00555 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.68■■□□□ 1.06
CACNA1AO00555 SLC7A5P1-201ENST00000568957 537 ntBASIC21.68■■□□□ 1.06
CACNA1AO00555 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CACNA1AO00555 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CACNA1AO00555 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC21.67■■□□□ 1.06
CACNA1AO00555 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.67■■□□□ 1.06
CACNA1AO00555 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CACNA1AO00555 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CACNA1AO00555 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC21.67■■□□□ 1.06
CACNA1AO00555 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CACNA1AO00555 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CACNA1AO00555 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CACNA1AO00555 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CACNA1AO00555 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
CACNA1AO00555 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.66■■□□□ 1.06
CACNA1AO00555 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
CACNA1AO00555 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CACNA1AO00555 RHEB-204ENST00000472642 900 ntTSL 3 BASIC21.66■■□□□ 1.06
CACNA1AO00555 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CACNA1AO00555 AC005181.1-201ENST00000604782 1256 ntBASIC21.66■■□□□ 1.06
CACNA1AO00555 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CACNA1AO00555 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.66■■□□□ 1.06
CACNA1AO00555 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
CACNA1AO00555 PROC-203ENST00000409048 1586 ntTSL 5 BASIC21.65■■□□□ 1.06
CACNA1AO00555 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
CACNA1AO00555 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
CACNA1AO00555 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CACNA1AO00555 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CACNA1AO00555 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
CACNA1AO00555 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC21.64■■□□□ 1.06
CACNA1AO00555 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
CACNA1AO00555 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CACNA1AO00555 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CACNA1AO00555 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
CACNA1AO00555 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.64■■□□□ 1.05
CACNA1AO00555 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.64■■□□□ 1.05
CACNA1AO00555 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.64■■□□□ 1.05
CACNA1AO00555 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CACNA1AO00555 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.64■■□□□ 1.05
CACNA1AO00555 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.64■■□□□ 1.05
CACNA1AO00555 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CACNA1AO00555 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CACNA1AO00555 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CACNA1AO00555 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.63■■□□□ 1.05
CACNA1AO00555 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC21.63■■□□□ 1.05
CACNA1AO00555 AC131274.2-201ENST00000580697 1507 ntBASIC21.63■■□□□ 1.05
CACNA1AO00555 AC133041.1-202ENST00000642053 222 ntBASIC21.63■■□□□ 1.05
CACNA1AO00555 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms