Protein–RNA interactions for Protein: A6NCS4

NKX2-6, Homeobox protein Nkx-2.6, humanhuman

Predictions only

Length 301 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-6A6NCS4 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NKX2-6A6NCS4 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.95■□□□□ 0.78
NKX2-6A6NCS4 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.95■□□□□ 0.78
NKX2-6A6NCS4 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
NKX2-6A6NCS4 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NKX2-6A6NCS4 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NKX2-6A6NCS4 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NKX2-6A6NCS4 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
NKX2-6A6NCS4 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
NKX2-6A6NCS4 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.94■□□□□ 0.78
NKX2-6A6NCS4 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
NKX2-6A6NCS4 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NKX2-6A6NCS4 AC142381.3-201ENST00000568208 1670 ntBASIC19.94■□□□□ 0.78
NKX2-6A6NCS4 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
NKX2-6A6NCS4 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NKX2-6A6NCS4 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
NKX2-6A6NCS4 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.94■□□□□ 0.78
NKX2-6A6NCS4 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.94■□□□□ 0.78
NKX2-6A6NCS4 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NKX2-6A6NCS4 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
NKX2-6A6NCS4 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NKX2-6A6NCS4 LTK-203ENST00000453182 2412 ntTSL 2 BASIC19.94■□□□□ 0.78
NKX2-6A6NCS4 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
NKX2-6A6NCS4 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NKX2-6A6NCS4 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NKX2-6A6NCS4 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NKX2-6A6NCS4 AC126544.1-201ENST00000580842 1059 ntBASIC19.93■□□□□ 0.78
NKX2-6A6NCS4 pRNA.6-201ENST00000610482 90 ntBASIC19.93■□□□□ 0.78
NKX2-6A6NCS4 pRNA.5-201ENST00000612139 90 ntBASIC19.93■□□□□ 0.78
NKX2-6A6NCS4 pRNA.11-201ENST00000618423 90 ntBASIC19.93■□□□□ 0.78
NKX2-6A6NCS4 pRNA.13-201ENST00000619112 90 ntBASIC19.93■□□□□ 0.78
NKX2-6A6NCS4 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19.93■□□□□ 0.78
NKX2-6A6NCS4 MED17-227ENST00000640521 2047 ntTSL 5 BASIC19.93■□□□□ 0.78
NKX2-6A6NCS4 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NKX2-6A6NCS4 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NKX2-6A6NCS4 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NKX2-6A6NCS4 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC19.92■□□□□ 0.78
NKX2-6A6NCS4 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
NKX2-6A6NCS4 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NKX2-6A6NCS4 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC19.92■□□□□ 0.78
NKX2-6A6NCS4 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC19.92■□□□□ 0.78
NKX2-6A6NCS4 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.92■□□□□ 0.78
NKX2-6A6NCS4 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.92■□□□□ 0.78
NKX2-6A6NCS4 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NKX2-6A6NCS4 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NKX2-6A6NCS4 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NKX2-6A6NCS4 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NKX2-6A6NCS4 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NKX2-6A6NCS4 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC19.91■□□□□ 0.78
NKX2-6A6NCS4 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.91■□□□□ 0.78
NKX2-6A6NCS4 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NKX2-6A6NCS4 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.91■□□□□ 0.78
NKX2-6A6NCS4 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NKX2-6A6NCS4 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
NKX2-6A6NCS4 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
NKX2-6A6NCS4 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
NKX2-6A6NCS4 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NKX2-6A6NCS4 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
NKX2-6A6NCS4 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NKX2-6A6NCS4 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
NKX2-6A6NCS4 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NKX2-6A6NCS4 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NKX2-6A6NCS4 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
NKX2-6A6NCS4 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.9■□□□□ 0.78
NKX2-6A6NCS4 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
NKX2-6A6NCS4 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NKX2-6A6NCS4 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
NKX2-6A6NCS4 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC19.9■□□□□ 0.78
NKX2-6A6NCS4 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
NKX2-6A6NCS4 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NKX2-6A6NCS4 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NKX2-6A6NCS4 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NKX2-6A6NCS4 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NKX2-6A6NCS4 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC19.89■□□□□ 0.78
NKX2-6A6NCS4 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
NKX2-6A6NCS4 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
NKX2-6A6NCS4 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.89■□□□□ 0.77
NKX2-6A6NCS4 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.89■□□□□ 0.77
NKX2-6A6NCS4 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NKX2-6A6NCS4 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
NKX2-6A6NCS4 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC19.89■□□□□ 0.77
NKX2-6A6NCS4 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC19.89■□□□□ 0.77
NKX2-6A6NCS4 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NKX2-6A6NCS4 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-6A6NCS4 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-6A6NCS4 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-6A6NCS4 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-6A6NCS4 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-6A6NCS4 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-6A6NCS4 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-6A6NCS4 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-6A6NCS4 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.88■□□□□ 0.77
NKX2-6A6NCS4 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.88■□□□□ 0.77
NKX2-6A6NCS4 IKBKGP1-201ENST00000612193 1073 ntBASIC19.88■□□□□ 0.77
NKX2-6A6NCS4 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-6A6NCS4 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-6A6NCS4 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC19.88■□□□□ 0.77
NKX2-6A6NCS4 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-6A6NCS4 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC19.88■□□□□ 0.77
NKX2-6A6NCS4 HLA-L-211ENST00000482052 1765 ntBASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms