Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 RPSAP52-203ENST00000622976 1023 ntBASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 AL033527.5-201ENST00000641382 801 ntBASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 COG1-201ENST00000299886 3079 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 TAX1BP1-207ENST00000433216 3174 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 SHMT1P1-201ENST00000419974 1312 ntBASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 AC005014.1-201ENST00000432006 2976 ntBASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 AC060814.4-201ENST00000594169 2163 ntBASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 SUPV3L1-201ENST00000359655 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 IFT81-202ENST00000361948 3048 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 PCID2-205ENST00000375477 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 FGGY-201ENST00000303721 1976 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 AC020917.4-201ENST00000623994 1999 ntBASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 MYCBP-201ENST00000397572 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC28BQ9BUN5 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 PCDHA6-201ENST00000378126 3267 ntBASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 RC3H2-201ENST00000335387 3081 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 CPT1C-204ENST00000405931 2785 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 EDF1-203ENST00000371649 790 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 AL136309.1-201ENST00000403917 691 ntBASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 AQP6-203ENST00000551733 849 ntTSL 3 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 AC025279.2-201ENST00000569730 653 ntBASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 DRG2-220ENST00000583355 891 ntTSL 3 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 RAB44-202ENST00000612677 4233 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 AL390066.1-201ENST00000456414 2302 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 GUCY1B3-204ENST00000505154 2316 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 KANK4-201ENST00000317477 2080 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 NOBOX-201ENST00000467773 2076 ntTSL 5 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 TRPM5-202ENST00000528453 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 SPAG5-AS1-201ENST00000414744 2143 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 HNRNPMP1-201ENST00000560685 1768 ntBASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28BQ9BUN5 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 C10orf90-202ENST00000356858 2995 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 DNM1P41-201ENST00000623634 3350 ntBASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 AL356966.1-201ENST00000454752 2367 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 NDRG4-236ENST00000566192 3265 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 GRAP-202ENST00000395635 834 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms