Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC14.11□□□□□ -0.15
VCANP13611 AL590094.1-208ENST00000636917 627 ntTSL 5 BASIC14.11□□□□□ -0.15
VCANP13611 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
VCANP13611 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
VCANP13611 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
VCANP13611 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.11□□□□□ -0.15
VCANP13611 VOPP1-204ENST00000418904 1317 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
VCANP13611 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.11□□□□□ -0.15
VCANP13611 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
VCANP13611 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
VCANP13611 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
VCANP13611 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
VCANP13611 AQP7-207ENST00000447660 998 ntTSL 2 BASIC14.11□□□□□ -0.15
VCANP13611 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
VCANP13611 RAB6B-205ENST00000486858 880 ntTSL 2 BASIC14.11□□□□□ -0.15
VCANP13611 AKR1B1P3-201ENST00000525311 588 ntBASIC14.11□□□□□ -0.15
VCANP13611 AC136475.1-203ENST00000602756 1034 ntTSL 3 BASIC14.11□□□□□ -0.15
VCANP13611 AL136115.2-201ENST00000602889 587 ntTSL 5 BASIC14.11□□□□□ -0.15
VCANP13611 C5orf60-208ENST00000625191 1208 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
VCANP13611 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
VCANP13611 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
VCANP13611 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
VCANP13611 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.11□□□□□ -0.15
VCANP13611 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.11□□□□□ -0.15
VCANP13611 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.11□□□□□ -0.15
VCANP13611 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
VCANP13611 PSMB8-201ENST00000374881 1351 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
VCANP13611 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
VCANP13611 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
VCANP13611 AC015656.1-201ENST00000624209 3578 ntBASIC14.11□□□□□ -0.15
VCANP13611 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
VCANP13611 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
VCANP13611 MRPL55-210ENST00000366736 660 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
VCANP13611 SUSD3-201ENST00000375469 1114 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
VCANP13611 PGAM1P10-201ENST00000402426 761 ntBASIC14.11□□□□□ -0.15
VCANP13611 PLA2G6-213ENST00000447598 567 ntTSL 5 BASIC14.11□□□□□ -0.15
VCANP13611 AC006372.1-201ENST00000449903 546 ntTSL 2 BASIC14.11□□□□□ -0.15
VCANP13611 GOLT1B-206ENST00000542038 933 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
VCANP13611 RAB42P1-201ENST00000555078 316 ntBASIC14.11□□□□□ -0.15
VCANP13611 AC011477.7-201ENST00000617163 1440 ntBASIC14.11□□□□□ -0.15
VCANP13611 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VCANP13611 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VCANP13611 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VCANP13611 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
VCANP13611 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
VCANP13611 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VCANP13611 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
VCANP13611 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.1□□□□□ -0.15
VCANP13611 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
VCANP13611 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VCANP13611 SVILP1-203ENST00000450581 486 ntTSL 3 BASIC14.1□□□□□ -0.15
VCANP13611 AL391822.1-201ENST00000452580 562 ntBASIC14.1□□□□□ -0.15
VCANP13611 OR4A49P-201ENST00000527050 632 ntBASIC14.1□□□□□ -0.15
VCANP13611 CBX3P4-202ENST00000540428 423 ntTSL 2 BASIC14.1□□□□□ -0.15
VCANP13611 ADIPOR1P2-201ENST00000554199 820 ntBASIC14.1□□□□□ -0.15
VCANP13611 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC14.1□□□□□ -0.15
VCANP13611 AC015802.4-203ENST00000592622 570 ntTSL 4 BASIC14.1□□□□□ -0.15
VCANP13611 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
VCANP13611 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VCANP13611 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VCANP13611 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
VCANP13611 AC026271.1-201ENST00000447794 1348 ntBASIC14.1□□□□□ -0.15
VCANP13611 CLUHP3-207ENST00000563678 1303 ntBASIC14.1□□□□□ -0.15
VCANP13611 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VCANP13611 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VCANP13611 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.1□□□□□ -0.15
VCANP13611 TCEAL9-202ENST00000372661 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VCANP13611 LDHAL6FP-201ENST00000405916 1082 ntBASIC14.1□□□□□ -0.15
VCANP13611 TXN2-204ENST00000416967 1280 ntTSL 2 BASIC14.1□□□□□ -0.15
VCANP13611 AC074366.1-204ENST00000446277 552 ntTSL 3 BASIC14.1□□□□□ -0.15
VCANP13611 RBMX-209ENST00000565438 1292 ntTSL 5 BASIC14.1□□□□□ -0.15
VCANP13611 TNFRSF10A-204ENST00000613472 978 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VCANP13611 SLC25A19-204ENST00000416858 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VCANP13611 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC14.1□□□□□ -0.15
VCANP13611 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VCANP13611 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
VCANP13611 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VCANP13611 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.1□□□□□ -0.15
VCANP13611 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.1□□□□□ -0.15
VCANP13611 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.1□□□□□ -0.15
VCANP13611 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC14.1□□□□□ -0.15
VCANP13611 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VCANP13611 CKS2-201ENST00000314355 613 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VCANP13611 MIR345-201ENST00000362114 98 ntBASIC14.09□□□□□ -0.15
VCANP13611 RPL5P21-201ENST00000404620 815 ntBASIC14.09□□□□□ -0.15
VCANP13611 B3GALNT1-204ENST00000417187 1107 ntTSL 2 BASIC14.09□□□□□ -0.15
VCANP13611 ALG1L14P-201ENST00000514230 434 ntBASIC14.09□□□□□ -0.15
VCANP13611 SNORA74.2-201ENST00000516496 180 ntBASIC14.09□□□□□ -0.15
VCANP13611 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC14.09□□□□□ -0.15
VCANP13611 CD74-201ENST00000009530 981 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
VCANP13611 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VCANP13611 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VCANP13611 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VCANP13611 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
VCANP13611 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VCANP13611 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
VCANP13611 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
VCANP13611 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
VCANP13611 AL139158.3-201ENST00000641212 1562 ntBASIC14.09□□□□□ -0.15
VCANP13611 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms