Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DOAP06340 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC16.57■□□□□ 0.24
HLA-DOAP06340 KRT18P62-201ENST00000446618 1287 ntBASIC16.57■□□□□ 0.24
HLA-DOAP06340 AC100858.1-201ENST00000514059 1228 ntBASIC16.57■□□□□ 0.24
HLA-DOAP06340 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
HLA-DOAP06340 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC16.57■□□□□ 0.24
HLA-DOAP06340 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DOAP06340 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC16.57■□□□□ 0.24
HLA-DOAP06340 AL049840.2-201ENST00000602722 535 ntBASIC16.57■□□□□ 0.24
HLA-DOAP06340 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
HLA-DOAP06340 AC011471.3-201ENST00000623576 402 ntBASIC16.57■□□□□ 0.24
HLA-DOAP06340 AC127024.7-201ENST00000625101 200 ntBASIC16.57■□□□□ 0.24
HLA-DOAP06340 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DOAP06340 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DOAP06340 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
HLA-DOAP06340 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DOAP06340 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DOAP06340 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC16.57■□□□□ 0.24
HLA-DOAP06340 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DOAP06340 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC16.57■□□□□ 0.24
HLA-DOAP06340 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DOAP06340 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HLA-DOAP06340 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DOAP06340 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
HLA-DOAP06340 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HLA-DOAP06340 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
HLA-DOAP06340 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DOAP06340 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DOAP06340 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DOAP06340 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DOAP06340 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DOAP06340 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DOAP06340 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DOAP06340 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 MIR1307-201ENST00000408840 149 ntBASIC16.56■□□□□ 0.24
HLA-DOAP06340 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DOAP06340 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DOAP06340 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 AC025186.1-201ENST00000478174 870 ntBASIC16.56■□□□□ 0.24
HLA-DOAP06340 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DOAP06340 EEF1GP8-201ENST00000506566 1154 ntBASIC16.56■□□□□ 0.24
HLA-DOAP06340 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DOAP06340 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 AL451007.2-201ENST00000632004 563 ntBASIC16.56■□□□□ 0.24
HLA-DOAP06340 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DOAP06340 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DOAP06340 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DOAP06340 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DOAP06340 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DOAP06340 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DOAP06340 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DOAP06340 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DOAP06340 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC16.56■□□□□ 0.24
HLA-DOAP06340 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DOAP06340 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DOAP06340 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DOAP06340 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DOAP06340 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
HLA-DOAP06340 TCAM1P-207ENST00000485295 1537 ntBASIC16.55■□□□□ 0.24
HLA-DOAP06340 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DOAP06340 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DOAP06340 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DOAP06340 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC16.55■□□□□ 0.24
HLA-DOAP06340 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC16.55■□□□□ 0.24
HLA-DOAP06340 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC16.55■□□□□ 0.24
HLA-DOAP06340 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DOAP06340 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DOAP06340 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC16.55■□□□□ 0.24
HLA-DOAP06340 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC16.55■□□□□ 0.24
HLA-DOAP06340 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DOAP06340 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DOAP06340 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DOAP06340 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DOAP06340 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DOAP06340 SSR4-202ENST00000370085 526 ntTSL 2 BASIC16.55■□□□□ 0.24
HLA-DOAP06340 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
HLA-DOAP06340 GCSHP3-201ENST00000431120 391 ntBASIC16.55■□□□□ 0.24
HLA-DOAP06340 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC16.55■□□□□ 0.24
HLA-DOAP06340 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms