Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC16.1■□□□□ 0.17
SMARCA1P28370 BANP-203ENST00000393207 2438 ntTSL 2 BASIC16.1■□□□□ 0.17
SMARCA1P28370 AL161772.1-201ENST00000610494 4412 ntBASIC16.1■□□□□ 0.17
SMARCA1P28370 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC16.1■□□□□ 0.17
SMARCA1P28370 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC16.1■□□□□ 0.17
SMARCA1P28370 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 ABCD1P2-201ENST00000429313 1601 ntBASIC16.1■□□□□ 0.17
SMARCA1P28370 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
SMARCA1P28370 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
SMARCA1P28370 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 DKKL1P1-201ENST00000400550 698 ntBASIC16.1■□□□□ 0.17
SMARCA1P28370 GGTLC4P-201ENST00000402176 664 ntBASIC16.1■□□□□ 0.17
SMARCA1P28370 RPL3P2-204ENST00000413027 1203 ntBASIC16.1■□□□□ 0.17
SMARCA1P28370 HINT2P1-201ENST00000419438 481 ntBASIC16.1■□□□□ 0.17
SMARCA1P28370 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC16.1■□□□□ 0.17
SMARCA1P28370 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC16.1■□□□□ 0.17
SMARCA1P28370 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC16.1■□□□□ 0.17
SMARCA1P28370 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC16.1■□□□□ 0.17
SMARCA1P28370 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
SMARCA1P28370 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 HINT1-205ENST00000508488 703 ntTSL 2 BASIC16.1■□□□□ 0.17
SMARCA1P28370 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
SMARCA1P28370 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC16.1■□□□□ 0.17
SMARCA1P28370 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC16.1■□□□□ 0.17
SMARCA1P28370 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC16.1■□□□□ 0.17
SMARCA1P28370 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC16.1■□□□□ 0.17
SMARCA1P28370 AC087045.2-201ENST00000606279 1003 ntBASIC16.1■□□□□ 0.17
SMARCA1P28370 AP000322.3-201ENST00000608665 388 ntBASIC16.1■□□□□ 0.17
SMARCA1P28370 AC007881.3-201ENST00000608897 607 ntBASIC16.1■□□□□ 0.17
SMARCA1P28370 AL031673.1-201ENST00000611460 466 ntBASIC16.1■□□□□ 0.17
SMARCA1P28370 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
SMARCA1P28370 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
SMARCA1P28370 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC16.1■□□□□ 0.17
SMARCA1P28370 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC16.1■□□□□ 0.17
SMARCA1P28370 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 APOL5-201ENST00000249044 1438 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
SMARCA1P28370 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC16.1■□□□□ 0.17
SMARCA1P28370 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
SMARCA1P28370 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SMARCA1P28370 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SMARCA1P28370 AC020917.4-201ENST00000623994 1999 ntBASIC16.09■□□□□ 0.17
SMARCA1P28370 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SMARCA1P28370 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SMARCA1P28370 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SMARCA1P28370 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SMARCA1P28370 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC16.09■□□□□ 0.17
SMARCA1P28370 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SMARCA1P28370 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SMARCA1P28370 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SMARCA1P28370 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SMARCA1P28370 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC16.09■□□□□ 0.17
SMARCA1P28370 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SMARCA1P28370 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
SMARCA1P28370 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SMARCA1P28370 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
SMARCA1P28370 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SMARCA1P28370 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SMARCA1P28370 FAM213A-204ENST00000372188 829 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SMARCA1P28370 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SMARCA1P28370 AL354861.1-201ENST00000445213 355 ntBASIC16.09■□□□□ 0.17
SMARCA1P28370 RPL7P35-201ENST00000446943 740 ntBASIC16.09■□□□□ 0.17
SMARCA1P28370 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC16.09■□□□□ 0.17
SMARCA1P28370 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC16.09■□□□□ 0.17
SMARCA1P28370 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC16.09■□□□□ 0.17
SMARCA1P28370 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC16.09■□□□□ 0.17
SMARCA1P28370 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC16.09■□□□□ 0.17
SMARCA1P28370 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC16.09■□□□□ 0.17
SMARCA1P28370 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC16.09■□□□□ 0.17
SMARCA1P28370 MIR6842-201ENST00000612539 65 ntBASIC16.09■□□□□ 0.17
SMARCA1P28370 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC16.09■□□□□ 0.17
SMARCA1P28370 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SMARCA1P28370 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC16.09■□□□□ 0.17
SMARCA1P28370 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SMARCA1P28370 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC16.09■□□□□ 0.17
SMARCA1P28370 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
SMARCA1P28370 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC16.09■□□□□ 0.17
SMARCA1P28370 AC117489.1-201ENST00000625169 3217 ntBASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms