Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC14.5□□□□□ -0.09
COL9A1P20849 CES1P2-201ENST00000566467 1242 ntBASIC14.5□□□□□ -0.09
COL9A1P20849 AC104072.1-201ENST00000568817 668 ntBASIC14.5□□□□□ -0.09
COL9A1P20849 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
COL9A1P20849 AC024267.5-201ENST00000579154 599 ntBASIC14.5□□□□□ -0.09
COL9A1P20849 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC14.5□□□□□ -0.09
COL9A1P20849 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC14.5□□□□□ -0.09
COL9A1P20849 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC14.5□□□□□ -0.09
COL9A1P20849 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
COL9A1P20849 AC025165.5-201ENST00000602802 578 ntBASIC14.5□□□□□ -0.09
COL9A1P20849 PDLIM1P1-201ENST00000604187 969 ntBASIC14.5□□□□□ -0.09
COL9A1P20849 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC14.5□□□□□ -0.09
COL9A1P20849 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL9A1P20849 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
COL9A1P20849 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.5□□□□□ -0.09
COL9A1P20849 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC14.5□□□□□ -0.09
COL9A1P20849 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC14.5□□□□□ -0.09
COL9A1P20849 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL9A1P20849 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL9A1P20849 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL9A1P20849 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL9A1P20849 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC14.5□□□□□ -0.09
COL9A1P20849 CTSD-208ENST00000636843 1512 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
COL9A1P20849 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
COL9A1P20849 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
COL9A1P20849 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL9A1P20849 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.5□□□□□ -0.09
COL9A1P20849 AL121753.2-201ENST00000624581 1461 ntBASIC14.5□□□□□ -0.09
COL9A1P20849 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL9A1P20849 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.5□□□□□ -0.09
COL9A1P20849 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
COL9A1P20849 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.49□□□□□ -0.09
COL9A1P20849 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 AC093462.1-201ENST00000621167 1683 ntBASIC14.49□□□□□ -0.09
COL9A1P20849 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
COL9A1P20849 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.49□□□□□ -0.09
COL9A1P20849 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.49□□□□□ -0.09
COL9A1P20849 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
COL9A1P20849 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC14.49□□□□□ -0.09
COL9A1P20849 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
COL9A1P20849 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 AIG1-203ENST00000367596 559 ntTSL 2 BASIC14.49□□□□□ -0.09
COL9A1P20849 CCDC153-202ENST00000415318 1173 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
COL9A1P20849 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC14.49□□□□□ -0.09
COL9A1P20849 RN7SL148P-201ENST00000467120 279 ntBASIC14.49□□□□□ -0.09
COL9A1P20849 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC14.49□□□□□ -0.09
COL9A1P20849 AC099328.1-201ENST00000498809 1030 ntBASIC14.49□□□□□ -0.09
COL9A1P20849 TMEM154-202ENST00000504064 878 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC14.49□□□□□ -0.09
COL9A1P20849 AC087203.1-201ENST00000532111 1181 ntBASIC14.49□□□□□ -0.09
COL9A1P20849 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
COL9A1P20849 AC010551.3-201ENST00000563772 463 ntTSL 5 BASIC14.49□□□□□ -0.09
COL9A1P20849 RN7SL605P-201ENST00000577229 281 ntBASIC14.49□□□□□ -0.09
COL9A1P20849 AC092634.5-206ENST00000593670 812 ntTSL 5 BASIC14.49□□□□□ -0.09
COL9A1P20849 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 AC016597.2-201ENST00000613256 341 ntBASIC14.49□□□□□ -0.09
COL9A1P20849 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 SNHG5-213ENST00000622963 753 ntTSL 5 BASIC14.49□□□□□ -0.09
COL9A1P20849 CU638689.4-208ENST00000623324 936 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 CU634019.6-203ENST00000624728 936 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
COL9A1P20849 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC14.49□□□□□ -0.09
COL9A1P20849 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC14.49□□□□□ -0.09
COL9A1P20849 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.49□□□□□ -0.09
COL9A1P20849 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
COL9A1P20849 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
COL9A1P20849 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
COL9A1P20849 AL354702.1-201ENST00000442006 1960 ntBASIC14.49□□□□□ -0.09
COL9A1P20849 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
COL9A1P20849 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.49□□□□□ -0.09
COL9A1P20849 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.49□□□□□ -0.09
COL9A1P20849 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL9A1P20849 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC14.49□□□□□ -0.09
COL9A1P20849 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
COL9A1P20849 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
COL9A1P20849 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms