Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
USH2AO75445 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
USH2AO75445 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC6.08□□□□□ -1.44
USH2AO75445 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
USH2AO75445 AC026271.1-201ENST00000447794 1348 ntBASIC6.08□□□□□ -1.44
USH2AO75445 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
USH2AO75445 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
USH2AO75445 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC6.08□□□□□ -1.44
USH2AO75445 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
USH2AO75445 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
USH2AO75445 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
USH2AO75445 FAM96A-202ENST00000380290 826 ntTSL 2 BASIC6.08□□□□□ -1.44
USH2AO75445 MED15P7-201ENST00000435410 822 ntBASIC6.08□□□□□ -1.44
USH2AO75445 AC108879.1-201ENST00000438026 828 ntTSL 3 BASIC6.08□□□□□ -1.44
USH2AO75445 BNC2-207ENST00000471301 745 ntTSL 3 BASIC6.08□□□□□ -1.44
USH2AO75445 FAM86DP-202ENST00000477247 995 ntBASIC6.08□□□□□ -1.44
USH2AO75445 AC079944.2-201ENST00000478867 734 ntBASIC6.08□□□□□ -1.44
USH2AO75445 DIS3L2P1-201ENST00000509197 559 ntBASIC6.08□□□□□ -1.44
USH2AO75445 CCDC42-202ENST00000539522 1087 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
USH2AO75445 SLC16A7-209ENST00000549465 537 ntTSL 3 BASIC6.08□□□□□ -1.44
USH2AO75445 EGLN3-209ENST00000553215 1004 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
USH2AO75445 ZNF223-202ENST00000585552 541 ntTSL 4 BASIC6.08□□□□□ -1.44
USH2AO75445 AFMID-205ENST00000586731 550 ntTSL 3 BASIC6.08□□□□□ -1.44
USH2AO75445 Metazoa_SRP.97-201ENST00000618280 304 ntBASIC6.08□□□□□ -1.44
USH2AO75445 TNFSF13-209ENST00000625791 955 ntTSL 2 BASIC6.08□□□□□ -1.44
USH2AO75445 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
USH2AO75445 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
USH2AO75445 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
USH2AO75445 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
USH2AO75445 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
USH2AO75445 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
USH2AO75445 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
USH2AO75445 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
USH2AO75445 DDC-204ENST00000426377 1700 ntTSL 3 BASIC6.08□□□□□ -1.44
USH2AO75445 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
USH2AO75445 RNA5SP407-201ENST00000410275 110 ntBASIC6.08□□□□□ -1.44
USH2AO75445 OR10AA1P-201ENST00000417823 937 ntBASIC6.08□□□□□ -1.44
USH2AO75445 C3orf18-202ENST00000422619 551 ntTSL 4 BASIC6.08□□□□□ -1.44
USH2AO75445 LINC01297-202ENST00000453395 624 ntTSL 5 BASIC6.08□□□□□ -1.44
USH2AO75445 SLC22A18AS-201ENST00000455942 697 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
USH2AO75445 EXOSC1-210ENST00000485122 564 ntTSL 5 BASIC6.08□□□□□ -1.44
USH2AO75445 AC116552.1-201ENST00000563243 733 ntTSL 3 BASIC6.08□□□□□ -1.44
USH2AO75445 AC002347.2-201ENST00000584139 171 ntTSL 3 BASIC6.08□□□□□ -1.44
USH2AO75445 AC092535.4-201ENST00000609548 397 ntBASIC6.08□□□□□ -1.44
USH2AO75445 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
USH2AO75445 SLC26A5-201ENST00000306312 2689 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
USH2AO75445 MTHFR-210ENST00000641407 2387 ntBASIC6.08□□□□□ -1.44
USH2AO75445 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
USH2AO75445 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
USH2AO75445 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC6.08□□□□□ -1.44
USH2AO75445 MYB-241ENST00000616088 3573 ntTSL 5 BASIC6.08□□□□□ -1.44
USH2AO75445 AC015656.1-201ENST00000624209 3578 ntBASIC6.08□□□□□ -1.44
USH2AO75445 HAO1-201ENST00000378789 1777 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
USH2AO75445 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC6.07□□□□□ -1.44
USH2AO75445 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
USH2AO75445 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
USH2AO75445 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
USH2AO75445 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC6.07□□□□□ -1.44
USH2AO75445 TMUB2-205ENST00000587172 1598 ntTSL 2 BASIC6.07□□□□□ -1.44
USH2AO75445 CC2D1A-208ENST00000589606 3117 ntAPPRIS ALT1 TSL 1 (best) BASIC6.07□□□□□ -1.44
USH2AO75445 RTN3-204ENST00000354497 1407 ntTSL 2 BASIC6.07□□□□□ -1.44
USH2AO75445 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC6.07□□□□□ -1.44
USH2AO75445 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC6.07□□□□□ -1.44
USH2AO75445 GSTM2P1-201ENST00000405166 654 ntBASIC6.07□□□□□ -1.44
USH2AO75445 CD81-209ENST00000492627 886 ntTSL 3 BASIC6.07□□□□□ -1.44
USH2AO75445 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC6.07□□□□□ -1.44
USH2AO75445 FAM230A-201ENST00000615181 315 ntTSL 5 BASIC6.07□□□□□ -1.44
USH2AO75445 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
USH2AO75445 NDRG2-201ENST00000298684 1784 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
USH2AO75445 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
USH2AO75445 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
USH2AO75445 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC6.07□□□□□ -1.44
USH2AO75445 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
USH2AO75445 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
USH2AO75445 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
USH2AO75445 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
USH2AO75445 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC6.07□□□□□ -1.44
USH2AO75445 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC6.07□□□□□ -1.44
USH2AO75445 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
USH2AO75445 GAST-201ENST00000329402 470 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
USH2AO75445 S100A6-202ENST00000368720 673 ntAPPRIS P1 TSL 3 BASIC6.07□□□□□ -1.44
USH2AO75445 SUSD3-201ENST00000375469 1114 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
USH2AO75445 AL022725.1-201ENST00000436283 369 ntTSL 2 BASIC6.07□□□□□ -1.44
USH2AO75445 CLDND1-223ENST00000511081 642 ntTSL 2 BASIC6.07□□□□□ -1.44
USH2AO75445 AC015909.2-201ENST00000523083 547 ntTSL 3 BASIC6.07□□□□□ -1.44
USH2AO75445 DHRS4L1-201ENST00000558293 855 ntTSL 5 BASIC6.07□□□□□ -1.44
USH2AO75445 Metazoa_SRP.85-201ENST00000610909 260 ntBASIC6.07□□□□□ -1.44
USH2AO75445 LINC02498-201ENST00000635390 1065 ntTSL 5 BASIC6.07□□□□□ -1.44
USH2AO75445 AL669831.6-201ENST00000635557 837 ntBASIC6.07□□□□□ -1.44
USH2AO75445 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
USH2AO75445 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
USH2AO75445 HFE-204ENST00000349999 1704 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
USH2AO75445 AC215219.1-201ENST00000400706 1817 ntBASIC6.07□□□□□ -1.44
USH2AO75445 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
USH2AO75445 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
USH2AO75445 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
USH2AO75445 DOC2GP-204ENST00000639052 2548 ntBASIC6.07□□□□□ -1.44
USH2AO75445 PSAT1-201ENST00000347159 1411 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
USH2AO75445 SUCLG2-204ENST00000493112 1516 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
USH2AO75445 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms